BAC Information

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BAC

Clone NameMSMg01-126E04
Chromosome15 (Build37)
Map Location 84,567,910 - 84,729,147
singlet/doubletdoublet
Overlap gene3110043J09Rik, Phf21b, LOC100043084
Upstream geneMpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8
Downstream gene4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126E04.T7 (MSMg01no126_e04.b1)MSMg01-126E04.TJ (MSMg01no126_e04.g1)
ACCAG335125AG335126
length743711
length of high quality
(start - end)
341 (47 - 387)298 (76 - 373)
definitionCHROMAT_FILE: MSMg01no126_e04.b1 PHD_FILE: MSMg01no126_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:34 2005CHROMAT_FILE: MSMg01no126_e04.g1 PHD_FILE: MSMg01no126_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,728,811 - 84,729,147)(84,567,910 - 84,568,207)
sequence
GAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATGGCTCTCCCACAGAAATCAGTGAGCCCTGGGCAGTGGCTCT
CCTCCGTACTTGGCCTATTCTAAAGAGCACTCTGGATATTCTCCATGGGG
CAGGGTGGGTCCTGGAGGCTATTTTCCTTCATCATGTAAATCCATGCTTA
GAGGAGTTGCACGCCACAGATTACACAGTCAGTGACCAAAATGATTCTTG
CCGCTATCGCCTTCAGTAGTGAAAATCACACACACCACTTCATAAAGAAA
ATAATTTTTTTTCTCCTGGCAGCTCATAATAGCTCTCTGGAGTCATTAAG
ACCTCCGCAGTCTGTCCAGGGCTTGGGAAGGGAGGGAGTGGATGAGATGA
TAAGTTTCTCCTTCCTCACCCCTTTTTTCCTTATATCTACCCCTTTTCTC
CCTCTCTCCCTTTCACCCCTTTTTTCCTCCCCCCTCAATTCGTTTTTCCC
CCCCCATCCCATTCCTTTCTCTCCCCTTGCTATCCCTATCTCTTTTCTTC
CTTTTATTCCCTTTTTCCGCCCCTTTGCTCATAATCACTTCCCCATATTT
TCTTTTACTCTTTTTGTCCCTATCGCATTCCCGCTATCTATCCCTTTCTC
TCCGCCGCACCATACCCTATCCTTTCCATTACGTTCCTTCACTCTTTTTC
CCCTTATCTCTACCCCTATTTTCATTATCCCCTTATTCCCTCT
CTTCGATGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTCCCTCCACCAAGTTCTGTTTC
CTAAGACCCTCTGGAATACAGAGAAGCTAAGATTATGGGCCCAAGTGACA
CTAGGGCTGCTGGAACAGAGGGCTCTATCCAAGGAGATTCTAACAGCAAA
TATTCAGACTCGTGGTTCTGGGGTTCAGAAGTGAGAACCCAGGGTGTGGG
TGGGTGAGCTCCTGGAGGCTCTGGTGAAATCTACCCCAACCTTCCCAGTA
TCCTTTGCTCTTCCTGAGGTTCCTTTGTACCTCTTGGCCTTTGTCTATCC
CTACACCGCCCACCTCCCCTGGCCTATGGCTGTGTTCTCTCCTGCCTCTT
TGTTCTAAATCCAAGATACCCCCATCTTGAACTTCAACCTAATTACATCT
GTGATAACCCTGTTTGCCATTAAAGTCACATGTATAGGCTCTAGGAAGTC
CTGAGCTGGTTTTCGTGGTGAGGGGACAGCTATTAACCCCAAGTTGCCCT
CCTAATCCTCTTTTCCTTATCCGCTATCCCCTATGTTCCTTCTTCGTTCA
GCCTTTGTTCGGTGTATTGGGCATTTTTAGTCTATCCCCCCTTTCATTCC
CCTCCGGATGGCTTCCCCACCCCCCATCCCCGGTTTCACCTTCAATTGTT
GTGGTATCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_e04.b1 MSMg01no126_e04.b1 CHROMAT_FILE:
MSMg01no126_e04.b1 PHD_FILE: MSMg01no126_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:34 2005
         (341 letters)



>mm_chr15_84728607_84729347
          Length = 741

 Score =  613 bits (317), Expect = e-180
 Identities = 332/337 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatggctctcccacagaaatcagtgagccctgggcagtggctctcctccgtact 64
           ||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 541 gaattccatggctctcagacagaaatcggtgagccctgggcagtggctctcctccgtact 482

                                                                       
Query: 65  tggcctattctaaagagcactctggatattctccatggggcagggtgggtcctggaggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggcctattctaaagagcactctggatattctccatggggcagggtgggtcctggaggct 422

                                                                       
Query: 125 attttccttcatcatgtaaatccatgcttagaggagttgcacgccacagattacacagtc 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 421 attttccttcatcatgtaaatccatgcttagaggagttgcacgccgcagattacacagtc 362

                                                                       
Query: 185 agtgaccaaaatgattcttgccgctatcgccttcagtagtgaaaatcacacacaccactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agtgaccaaaatgattcttgccgctatcgccttcagtagtgaaaatcacacacaccactt 302

                                                                       
Query: 245 cataaagaaaataattttttttctcctggcagctcataatagctctctggagtcattaag 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cataaagaaaatacttttttttctcctggcagctcataatagctctctggagtcattaag 242

                                                
Query: 305 acctccgcagtctgtccagggcttgggaagggaggga 341
           |||||||||||||||||||||||||||||||||||||
Sbjct: 241 acctccgcagtctgtccagggcttgggaagggaggga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no126_e04.g1 MSMg01no126_e04.g1 CHROMAT_FILE:
MSMg01no126_e04.g1 PHD_FILE: MSMg01no126_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:34 2005
         (298 letters)



>mm_chr15_84567710_84568407
          Length = 698

 Score =  522 bits (270), Expect = e-153
 Identities = 291/298 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttccctccaccaagttctgtttcctaagaccctctggaatacagagaagctaagatta 60
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 201 atttccctccaccaagttctgtttcctaagaccctctggaatatagagaaactaagatta 260

                                                                       
Query: 61  tgggcccaagtgacactagggctgctggaacagagggctctatccaaggagattctaaca 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 tgggcccaagtgacactagggctgctggaacagagggccctatccaaggagattctaaca 320

                                                                       
Query: 121 gcaaatattcagactcgtggttctggggttcagaagtgagaacccagggtgtgggtgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaatattcagactcgtggttctggggttcagaagtgagaacccagggtgtgggtgggt 380

                                                                       
Query: 181 gagctcctggaggctctggtgaaatctaccccaaccttcccagtatcctttgctcttcct 240
           ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gagctcctggaggctctggggaaatctaccccaaccttcccagcatcctttgctcttcct 440

                                                                     
Query: 241 gaggttcctttgtacctcttggcctttgtctatccctacaccgcccacctcccctggc 298
           | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggttcatttgtacctcttggcctttgtctatccctacaccgcccacctcccctggc 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)