BAC Information

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BAC

Clone NameMSMg01-127J10
Chromosome15 (Build37)
Map Location 72,741,497 - 72,741,826
singlet/doubletsinglet
Overlap gene1810044A24Rik
Upstream geneCol22a1, Kcnk9, LOC665621, Peg13
Downstream geneLOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127J10.T7 (MSMg01no127_j10.b1)MSMg01-127J10.TJ (MSMg01no127_j10.g1)
ACCAG336085AG336086
length739697
length of high quality
(start - end)
---331 (76 - 406)
definitionCHROMAT_FILE: MSMg01no127_j10.b1 PHD_FILE: MSMg01no127_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:23 2005CHROMAT_FILE: MSMg01no127_j10.g1 PHD_FILE: MSMg01no127_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCAAACACCGCGGCGCTACTCGACTATTATAATTCGAAAACCGTGCAA
CTACATTGATTTTCTCTGAAAGACTGTGTTCTTATACCAATATGTCAACT
TATCAACTCATAACAGAATACTACACCCCCCTAGTACATGGTAGGTTCAA
TAACTGTTTCCTCCTCTTGAACAATACCTTTCATTGCGCCCTTATGAACA
GAAACCTGTTTACGGACCAACTGTTATAAAGCTTATGCCAAAACCATCTG
ACTACAATTCAGTCATCATATCGTTTTGTTTGACACCTACAATGCTTCTG
ATCACATTCATACCCGTAAAAAGTCTCGCTCTCCCTTAAAAAGCATAAAG
CCATTACTGACCATGACACCTCACCCTCACCTATCAACAATCTTTCTCGA
GTATTGCCACCTGTTTTCCCCCCCCTAATTTGCCCACAAATCTATTCCAT
CTTCTACTTCCCTTTCCCGCTTTCTCCCTTTTCCCCCACCTTGAAATTTT
TACAGATCATCTTTTAAACATCTTACACCGACACTATTTCTCATTTCTCC
TCCCCTATCTTGCTTCCCCAACCTTTCTTTTTATATCCCCCATTTCCCCC
GGTCCACCCACCCCTGCTCCCAATTTTTCACCCACCACTTTTTATCTCCC
CCTACTTTTTTTTTTATCCACATCACACTCCACATCCCCCTCGTTTTTAC
CCATTACCTTACATTACCCCCCATGCCAGTACATTAAAA
NNTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCGTGGTCTACAGAGCCA
TTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTTGTGGTTGGG
GGAAGACCAGATCATGAAAAGGCAGTATTAAAAGAGCAGAGAACTTAAGC
AAGCATTGTGAGCAGGTGGTAGGTGACAGTTGACCATGTGTTTAGCATCC
CTAAACCCTTGGGTTCAGTTTTCAAAACGAAAAGCATTAAAAGGAATAGG
AGCAGGGAGAAGAGAAGAGAGCTTGGCTCTAAGTCTCCCATCCTTGCCTA
AGTGCAGACAGAACATCCCCAGCAGTGCCTACTGAGAACAACCCACATGT
CCACGAGAAGCAGAAAGGCCCACCTTCTGACCTGACACAGCAGCATACCA
CACAGCAAGAGAACATGTGAGCGCTGGCATGGGTCTCAAACACCATGTTG
AGATGAAGGAAGGCAGTGGACACTGATTTGAGGCTTCTGCTTCCAGAAGT
CTAAATGAACATCTTCATGTGATTCTTAAAGCCCTGAGGACTAAATAGAC
TGCCCCACAATAGAGATATATTTAGTTTCATGTACCACGCAAGACTAATG
CTTTGTGTTGCTAGCTCCAGCTGCGTATCTTGATAGATAGCTACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_j10.g1 MSMg01no127_j10.g1 CHROMAT_FILE:
MSMg01no127_j10.g1 PHD_FILE: MSMg01no127_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:23 2005
         (331 letters)



>mm_chr15_72741229_72741958
          Length = 730

 Score =  609 bits (315), Expect = e-179
 Identities = 327/331 (98%), Gaps = 1/331 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccagcgtggtctacagagccatttccaggacagccagggctacacagagaaaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaggccagcgtggtctacagagccatttccaggacagccagggctacacagagaaaccct 539

                                                                       
Query: 61  gtctttgtggttgggggaagaccagatcatgaaaaggcagtattaaaagagcagagaact 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gtctttggggttgggggaagaccagatcatgaaaaggcagtattaaaagagcagagaact 479

                                                                       
Query: 121 taagcaagcattgtgagcaggtggtaggtgacagttgaccatgtgtttagcatccctaaa 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 478 taagcaagcattgtgagcaggtggcaggtgacagttgaccatgtgtttagcatccctaaa 419

                                                                       
Query: 181 cccttgggttcagttttcaaaacgaaaagcattaaaaggaataggagcagggagaagaga 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 418 cccttgggttcagttttcaaaacgaaaagcattaaaaggaagaggagcagggagaagaga 359

                                                                       
Query: 241 agagagcttggctctaagtctcccatccttgcctaagtgcagacagaacatccccagcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agagagcttggctctaagtctcccatccttgcctaagtgcagacagaacatccccagcag 299

                                          
Query: 301 tgcctactgagaacaacccacatgtccacga 331
           |||| ||||||||||||||||||||||||||
Sbjct: 298 tgcc-actgagaacaacccacatgtccacga 269


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 730
Length adjustment: 9
Effective length of query: 322
Effective length of database: 721
Effective search space:   232162
Effective search space used:   232162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)