BAC Information

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BAC

Clone NameMSMg01-128A06
Chromosome15 (Build37)
Map Location 86,721,987 - 86,722,235
singlet/doubletsinglet
Overlap genenone
Upstream geneTrmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
Downstream geneLOC100042309, AW049604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128A06.T7 (MSMg01no128_a06.b1)MSMg01-128A06.TJ (MSMg01no128_a06.g1)
ACCAG336397AG336398
length751698
length of high quality
(start - end)
49 (74 - 122)248 (80 - 327)
definitionCHROMAT_FILE: MSMg01no128_a06.b1 PHD_FILE: MSMg01no128_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:58 2005CHROMAT_FILE: MSMg01no128_a06.g1 PHD_FILE: MSMg01no128_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGAGTATCACCAGAGAGAAGAAATAGGGGAAACCCTGCAAAA
CTAGTCACTCTGGTCCTGGGGGGCCGGGGGTGGGGGAGAGGAGATTAAAT
TTTCTAACACGGCATAACGCCGGCGGGCTATTATTTCGTTTTCCTGAACG
CCGAATTTCCCTTTTATCCGTTCGCCTTACGCCTCCGCTTATCCCCCTTG
TTTGTGCTTGAGGCGGGTGGTTGGCTTGCATTGGAGCGAGGCGCGGGTGA
CTGACAGATACACGGCACACACCTTTTTTTTATAAAACCCCACCTTCTCC
CTTATCTGCTTACTTATTTTTAATCCCCACCCCTCCTCATTTTAAGTGGT
GTAGGTGGGACGTGTGGCGGGGTGGCTACACACAAAAATAAAAAAAATAA
TTTTAGGGGGGGGGGTGTTTTCCCCCATTGTTATCTATATCTATCTTATC
TTATGCGTTCCCCCGCGCGCCGCAAAAAGGATAGTGTCAGGATCATAGTT
TAGTTATACGCGATTCGGGTGTAATTGCATACATATGATTAAACGCTCAC
AATATCGCGCTGTAATGCCAATATTCCCTATATTCCCTAAGCTCAAGGCC
TATCGCACCCAAATAAGTATATGATGCGTCGAATATATTTACTCATTATA
ACTGTAAAACGTAAAGGCGGCGGGAATGCGCTGTTAGAGATGGCCGCATC
G
NNNNTTTCATGATAGTGGGTAGCCTGGTGGCCGCCTGGTTCTAAAATTTA
GGTGAACTATAGAATTTTCCGAGGAATTACTGACTTGATCCCAAGGCCCT
GGGGAGAAAAACAAATCTCCTCTTCAATTTTTCTCATGGTTTTAGAAATA
GCAAGGTCACCTTAGGTTGAAGTATGACCGGTGATTAGGGGCAGCTTCTG
TAAAAGGGACATAGGAAAGCAGCCTCCTCATGTCACATGACCATTAGAGA
GACACAATGGAGGGGACTGAAAGAGGACAAGTCCTTTATAATCACTGTAG
TGTTGAAAATGTTAGGAGTGTGTTGGGGGCTGGAGAGATGGATCAGTGGT
TAGGAACACTGTCCACTCCTGCTGGGGACTCAGGTTTGAGTTCTAGCTTC
CATGTATATGCTCACCCCCATCCGTGGTTCCAGATCTAGGTAATCCTTCT
CCCTCTTTACCCATTGTTCATATGTGGAACACACACATGCATACATTCTT
ACTTACCTACATACCTACTTATACTCCCACCTCACATAAGCAATATATAA
TCTTTTAAAACAACTTAATGAAAATACCGCGCACTTTTGTTTGATATTAA
TCTGACGCCCCCGCCGCCACGATTGGCTGCTTGAATTAAGGCCAAACTTT
AAACCTTACGCTTATACAACTTATTTGCTTGCTATGCATAACTGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_a06.g1 MSMg01no128_a06.g1 CHROMAT_FILE:
MSMg01no128_a06.g1 PHD_FILE: MSMg01no128_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:58 2005
         (248 letters)



>mm_chr15_86721787_86722435
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%), Gaps = 1/249 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgacttgatcccaaggccctggggagaaaaa-caaatctcctcttcaatttttctcatg 59
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 449 ctgacttgatcccaaggccctggggagaaaaatcaaatctcctcttcaatttttctcatg 390

                                                                       
Query: 60  gttttagaaatagcaaggtcaccttaggttgaagtatgaccggtgattaggggcagcttc 119
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gctttagaaatagcaaggtcaccttaggttgaagtatgaccggtgattaggggcagcttc 330

                                                                       
Query: 120 tgtaaaagggacataggaaagcagcctcctcatgtcacatgaccattagagagacacaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgtaaaagggacataggaaagcagcctcctcatgtcacatgaccattagagagacacaat 270

                                                                       
Query: 180 ggaggggactgaaagaggacaagtcctttataatcactgtagtgttgaaaatgttaggag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggaggggactgaaagaggacaagtcctttataatcactgtagtgttgaaaatgttaggag 210

                    
Query: 240 tgtgttggg 248
           |||||||||
Sbjct: 209 tgtgttggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 649
Length adjustment: 9
Effective length of query: 239
Effective length of database: 640
Effective search space:   152960
Effective search space used:   152960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)