Query= MSMg01no128_m08.b1 MSMg01no128_m08.b1 CHROMAT_FILE:
MSMg01no128_m08.b1 PHD_FILE: MSMg01no128_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:58 2005
(526 letters)
>mm_chr15_51452785_51453714
Length = 930
Score = 874 bits (452), Expect = 0.0
Identities = 506/524 (96%), Gaps = 4/524 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctgatg-ttcgtga-atatacttgac-acaaagaa-caacagttcaggagat 59
|||||||||||||| | |||| ||||||||||| |||||||| ||||||||||||||||
Sbjct: 204 ggaattctctgatgatgagtgacatatacttgacaacaaagaaccaacagttcaggagat 263
Query: 60 aatgtggttttaaactcacagcagcccttaagtgcacaaacacgaatctcctggtcccgt 119
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatgtggtttcaaactcacagcagcccttaagtgcacaaacacgaatctcctggtcccgt 323
Query: 120 tcctaccctgaaaggtgagaagcttcggaagcagagttttccatgcagtttttttataag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcctaccctgaaaggtgagaagcttcggaagcagagttttccatgcagtttttttataag 383
Query: 180 ccgacgaggttggtccagagcgtgccatagttggagatacatagactgtccatgaatcag 239
| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 ctgacgaggttggtccagtgcgtgccgtagttggagatacatagactgtccatgaatcag 443
Query: 240 tgctctgactcaccactcagaagcaattttggaatgctgaattttatatggtgctgccca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgctctgactcaccactcagaagcaattttggaatgctgaattttatatggtgctgccca 503
Query: 300 acaccagagatggtaacatagttgtgtaccagattcatttcccttctcatgcacaattag 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acatcagagatggtaacatagttgtgtaccagattcatttcccttctcatgcacaattag 563
Query: 360 ctttctactaccacttaattccttgaaacttttattagtatgagatagatgccaagggtg 419
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 564 ctttctactataacttaattccttgaaacttttactagtatgagatagatgccaagggtg 623
Query: 420 taacaaccctaaatggatggataaactttcttctcagcctaactttctcagtaacgtctg 479
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgacaaccctaaatggatggatacactttcttctcagcctaactttctcagtaacgtctg 683
Query: 480 tcttcactgagcctttcagacataaaagcatcactagatcatca 523
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 684 tcttcactgagcctttcagatgtaaaagcatcactagatcatca 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 930
Length adjustment: 10
Effective length of query: 516
Effective length of database: 920
Effective search space: 474720
Effective search space used: 474720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_m08.g1 MSMg01no128_m08.g1 CHROMAT_FILE:
MSMg01no128_m08.g1 PHD_FILE: MSMg01no128_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:58 2005
(262 letters)
>mm_chr15_51593346_51594007
Length = 662
Score = 499 bits (258), Expect = e-146
Identities = 261/262 (99%)
Strand = Plus / Minus
Query: 1 acacaaagcatttcttaaaaagcagcaactcttcatttctaaatgaccaaggaaaaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acacaaagcatttcttaaaaagcagcaactcttcatttctaaatgaccaaggaaaaattc 403
Query: 61 caggctgactgttcataaagttaaaatgggggaaaaattaggatggcaataaatcttcca 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 402 caggctgactgttcataaagttagaatgggggaaaaattaggatggcaataaatcttcca 343
Query: 121 tgagatcacactataaatctagggagaaaccctttcgggtgacacaaggcataaccttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgagatcacactataaatctagggagaaaccctttcgggtgacacaaggcataaccttta 283
Query: 181 acagctaatagtcttgaaactgtttgtgtctgaccgtgctgagtccctaagtggactcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acagctaatagtcttgaaactgtttgtgtctgaccgtgctgagtccctaagtggactcca 223
Query: 241 ttccaacattgtcatttatctt 262
||||||||||||||||||||||
Sbjct: 222 ttccaacattgtcatttatctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space: 165209
Effective search space used: 165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
