BAC Information

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BAC

Clone NameMSMg01-129J12
Chromosome15 (Build37)
Map Location 71,386,580 - 71,479,762
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383051, 1700010C24Rik
Downstream geneLOC100040847, Col22a1, Kcnk9, 1810044A24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129J12.T7 (MSMg01no129_j12.b1)MSMg01-129J12.TJ (MSMg01no129_j12.g1)
ACCAG337564AG337565
length708721
length of high quality
(start - end)
551 (61 - 611)194 (126 - 319)
definitionCHROMAT_FILE: MSMg01no129_j12.b1 PHD_FILE: MSMg01no129_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:03 2005CHROMAT_FILE: MSMg01no129_j12.g1 PHD_FILE: MSMg01no129_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,386,580 - 71,387,130)(71,479,571 - 71,479,762)
sequence
GCGGCCGCTATACGACTCCTATATCCAGAGGATCCGCGGAATTCCAACAT
CTCTCATTGATGAGAAAAAGAGTGGCTTCCAGGGTGTATTCTATTGCCTT
TCTGCCTAGCCAGCTAGCCATAGTCAAAGCACACCTTGCTATTAAGCCTT
ATTATGGAAGGAATGAGACAAAATTGCACAGCATGGCACATGGATGGTTA
AATATCTTAAGGAATTCATGGCAACACAACTGCCAGAAGAGATGTCCACA
TCACAAATACCCCTGTCAAACCTTTGCCTCTCTTCAGCTACAATGCAGTT
CTTACTGTCTCACACCTGATTCAGCTCTGCCTTGGGAATACTTATGTTGG
CTTTATTTATGAGCTTTCATTAAACCCATGTTAAAGTGCTTCATTGATAA
TACACTAAAATATGCCTGGCCCTTTTACATAAGATATCAATAATGGTACA
GCAGCACCACCATCAAGCTTGTGAACTCTCAGTTACCTGACTTAGCGGTT
GAAGACTTTGAGCTGGGTGAATGGACTTTTAACACAGATGAATCCAGGTT
CTGATGGAAATATGACCTGCTTCTCANATAGCCATGTCCCTTCATCTCAT
CATTTCCCAGTTTTAACTACCTCAAAATTAGAACAAAAATATAGTATGAT
GAGTCTCTGTTCTCTCTTAAGTTTTTGAACAGCAAAGGGATGCCCAAGAA
CATCAAGC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAAATTCTGTTGGAGGTTGGTGGTTCAGCTCTG
GAAAGCACCATCAATTTTTATCCACTGAAAATAGAAGGTTGGCCCTTATG
CTAGTACTTCTCATATATTGTGGATGTTTGGAACAAGACACAGGGTAGTG
AGGATCATTTGCTTAAAATTAGGGAACTAGGCCCCTTTTTCTGAGTCTGG
AATGTGTCTTGGTATAGCCCAAGGACAAAGAGCTCCCTGACTTAGGCAGG
CTTACATAAAGACTGGGTAGTATTTATGAAGAAACTAAAGGGGATTCCAC
ACAGGCTTTTCTCTCTCTCCCGCTATCACGAGTGGGTGTCTGACCTACTT
GTTCTTCACTCATTTCCCCTTTTCCTCAAATTCTTCCCTTCCTCCCACTT
GCTTCCAGTAGAGGTGGTTGGAGGGTGAGGTTGGTATAAACTAGGCAGGC
ACTGATGAATGCTCCATGGTAACATTACTCCTCCTTCTATCTTTAAGTTG
ACTCTGACTGTTTCACTCTCCCGCGGTTCAACCATTCATTCTTGTAGTTC
TCTATCCCCGTAACGGTTCCGGCCCCCGCCAATCCGTCTGTTCTGTGCGA
TCCTCGACTTGTTCACTATGCTTTTCCTACCTTTATTTGCCCTACTTTAT
TCCGCGTCCCTATTTACCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_j12.b1 MSMg01no129_j12.b1 CHROMAT_FILE:
MSMg01no129_j12.b1 PHD_FILE: MSMg01no129_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:03 2005
         (551 letters)



>mm_chr15_71386380_71387330
          Length = 951

 Score = 1052 bits (544), Expect = 0.0
 Identities = 549/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaaaaagagtggcttccagggtgtattctattgcctttctgcctagccagctagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagaaaaagagtggcttccagggtgtattctattgcctttctgcctagccagctagcca 260

                                                                       
Query: 61  tagtcaaagcacaccttgctattaagccttattatggaaggaatgagacaaaattgcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtcaaagcacaccttgctattaagccttattatggaaggaatgagacaaaattgcaca 320

                                                                       
Query: 121 gcatggcacatggatggttaaatatcttaaggaattcatggcaacacaactgccagaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatggcacatggatggttaaatatcttaaggaattcatggcaacacaactgccagaaga 380

                                                                       
Query: 181 gatgtccacatcacaaatacccctgtcaaacctttgcctctcttcagctacaatgcagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgtccacatcacaaatacccctgtcaaacctttgcctctcttcagctacaatgcagtt 440

                                                                       
Query: 241 cttactgtctcacacctgattcagctctgccttgggaatacttatgttggctttatttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttactgtctcacacctgattcagctctgccttgggaatacttatgttggctttatttat 500

                                                                       
Query: 301 gagctttcattaaacccatgttaaagtgcttcattgataatacactaaaatatgcctggc 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagttttcattaaacccatgttaaagtgcttcattgataatacactaaaatatgcctggc 560

                                                                       
Query: 361 ccttttacataagatatcaataatggtacagcagcaccaccatcaagcttgtgaactctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttttacataagatatcaataatggtacagcagcaccaccatcaagcttgtgaactctc 620

                                                                       
Query: 421 agttacctgacttagcggttgaagactttgagctgggtgaatggacttttaacacagatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttacctgacttagcggttgaagactttgagctgggtgaatggacttttaacacagatg 680

                                                                       
Query: 481 aatccaggttctgatggaaatatgacctgcttctcanatagccatgtcccttcatctcat 540
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 aatccaggttctgatggaaatatgacctgcttctcaaatagccatgtcccttcatctcat 740

                      
Query: 541 catttcccagt 551
           |||||||||||
Sbjct: 741 catttcccagt 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no129_j12.g1 MSMg01no129_j12.g1 CHROMAT_FILE:
MSMg01no129_j12.g1 PHD_FILE: MSMg01no129_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:04 2005
         (194 letters)



>mm_chr15_71479371_71479964
          Length = 594

 Score =  371 bits (192), Expect = e-107
 Identities = 192/192 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaaatagaaggttggcccttatgctagtacttctcatatattgtggatgtttggaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgaaaatagaaggttggcccttatgctagtacttctcatatattgtggatgtttggaaca 333

                                                                       
Query: 61  agacacagggtagtgaggatcatttgcttaaaattagggaactaggcccctttttctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agacacagggtagtgaggatcatttgcttaaaattagggaactaggcccctttttctgag 273

                                                                       
Query: 121 tctggaatgtgtcttggtatagcccaaggacaaagagctccctgacttaggcaggcttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tctggaatgtgtcttggtatagcccaaggacaaagagctccctgacttaggcaggcttac 213

                       
Query: 181 ataaagactggg 192
           ||||||||||||
Sbjct: 212 ataaagactggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)