BAC Information

Click to search

BAC

Clone NameMSMg01-130D23
Chromosome15 (Build37)
Map Location 51,343,584 - 51,343,980
singlet/doubletsinglet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130D23.T7 (MSMg01no130_d23.b1)MSMg01-130D23.TJ (MSMg01no130_d23.g1)
ACCAG338050AG338051
length1,131726
length of high quality
(start - end)
397 (467 - 863)653 (74 - 726)
definitionCHROMAT_FILE: MSMg01no130_d23.b1 PHD_FILE: MSMg01no130_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:57 2005CHROMAT_FILE: MSMg01no130_d23.g1 PHD_FILE: MSMg01no130_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGCTTTCTNNNNNACCACTGCGCGCTATAGACTCCTAAGGGAGAGGAT
CCGCGGAATTAGGGGGTTAGATGGCCCTTAAACATGGCCATGAGGACTGT
CACTCAACACTGGTTCCTGTAATGGGCATAAAACTCCAGGCGAGATAGGA
ATGCAGAGGGCTGTTAGGACTTTCACTAGTCCTCTAGACGCTGACATTAT
ATCTTTAATTTCTTCGCATGTTTAAAGAACTATGGGTTATTTGCTTTGAG
TGTGAAAATTTCAATCTTTGTCCATACTATGATAATCCTTCTTCTTTGGT
TTTCATTGCTCCTGGGTAGGCAAGCAGAAGTGTCCTTATTTCTCTATTTG
GCATTAGTTTTGGGAGTTGTATTTACTGACTAGAATCTTGGCAAAGATAA
TATTTTTTCTCAGTGACAAACACTACCTCCAATTTTTACTTACAAGGCCT
CACTTTTACCACCCGGAGCATACATCAGTAGCTTACTGAAGAAGGAATAT
ATTTTGAACTATGTCCTAAGCGGTTCATATGCAGTATTATTAAACCAGAG
AAAAGGTTTAATAAAAACCCAGCTTTCTGTAGCAGAATTAACTAAATCAA
AATGGGACTTGTTTTTGGTCAACTTTACAGAAAGTCGTCAGCTTTCCAAG
AACTAAAATATAGCTTCCCGTCTTGACTGCTTGAAATGGCTTACTGTCAT
CTGTTTTGGATGTTAAAGAATCTGATTTAATTTCAGCAGTAAGGCCCCCC
TCTTCTTCATTTAGCAGGTGTTAATTATTTAAACACTACTCATTTTAATT
TGCTTACCATCATTCTTCAGAATTATTTGCTTAACAGGTTTCATTGTGTG
CATTTCTTGAAAGAAAAACTGAATTGAAAAAAGATCAGAAAAGAAAAGAA
AAGAAAAAAAGAAAGTGAGAAGAATAGAAGTTGATGCCCTCAGATGGCAT
GGAGAAACCTATTGATAGGTGGTACTGGTGGGTGAAGTTGCCTTTCCTGA
ATTAAGATCTTCATGATCTCGGCTGGATGAATATATTATTCATACCTCCT
TTTTATTCTTCCCCTAAAAAAAAAAAAAGTTGCCTCTAGGGCCAAAGCCC
TGGGTCCCCGGCCGGGCTAAAGAATCCGGGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGCTCATACAGAAACATGATAAAAG
CATTCTACAGCAGGCCAGTAGCCAACATCAAAGTAAATGGCGAGAAGCTG
GAAGCAATCCCACTAAAATCAGGGACTAGAGAAGGCTGTCCACTTTCTCC
CTACCTATTCAACATTGTACTTGAAGTCCTAGCCATAGCAATTCGACAAT
AAAAGGAGATCAAGGGAATACAAATTGGAAAGGAAGAAGTCAAAATATCA
CTTTTTGCAGATGATATGATAGTACATATGTAAGTGACCCTAAAAATTCC
ACCAGAGAACTCCTAAACCTGATAAACAGCTTCAGTGAAGTAGTTAGATA
TAAAATTAACTCAAACAAGCCAATGGCCTTTCTCTACACAAAGGATAAAC
AGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCAAAAAT
AATATAAAATACCTTGGCGTATCTCTAACTAAGGAAGTGAAAGATCTGTA
TGATAAGAACTTCAAGTGTCTGAAGAAAGAAATTAAAGAAGATCTCAGAA
GATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAATATAGTAAAA
ATGGCTATCCTGCCGAAAGCAATCTACAGATTCAATGCAATCCCCATCAA
AATTCCAACTCAATTCTTCAATGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_d23.b1 MSMg01no130_d23.b1 CHROMAT_FILE:
MSMg01no130_d23.b1 PHD_FILE: MSMg01no130_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:57 2005
         (397 letters)



>mm_chr15_51343384_51344180
          Length = 797

 Score =  752 bits (389), Expect = 0.0
 Identities = 395/397 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatacatcagtagcttactgaagaaggaatatattttgaactatgtcctaagcggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 agcatacatcagtagcttactgaagaaggaatatattttgaactatgtcctaagcggttc 538

                                                                       
Query: 61  atatgcagtattattaaaccagagaaaaggtttaataaaaacccagctttctgtagcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atatgcagtattattaaaccagagaaaaggtttaataaaaacccagctttctgtagcaga 478

                                                                       
Query: 121 attaactaaatcaaaatgggacttgtttttggtcaactttacagaaagtcgtcagctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 attaactaaatcaaaatgggacttgtttttggtcaactttacagaaagtcgtcagctttc 418

                                                                       
Query: 181 caagaactaaaatatagcttcccgtcttgactgcttgaaatggcttactgtcatctgttt 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 417 caagaactaaaatatagcttcctgtcttgactgcttgaaatggcttactgtcatctgttt 358

                                                                       
Query: 241 tggatgttaaagaatctgatttaatttcagcagtaaggcccccctcttcttcatttagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tggatgttaaagaatctgatttaatttcagcagtaaggcccccctcttcttcatttagca 298

                                                                       
Query: 301 ggtgttaattatttaaacactactcattttaatttgcttaccatcattcttcagaattat 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 297 ggtgttaattatttaaacactactcattttaatttgcttcccatcattcttcagaattat 238

                                                
Query: 361 ttgcttaacaggtttcattgtgtgcatttcttgaaag 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttgcttaacaggtttcattgtgtgcatttcttgaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)