BAC Information

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BAC

Clone NameMSMg01-130H03
Chromosome15 (Build37)
Map Location 63,407,289 - 63,407,698
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040430, Tsg101-ps, EG239502
Downstream geneEG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130H03.T7 (MSMg01no130_h03.b1)MSMg01-130H03.TJ (MSMg01no130_h03.g1)
ACCAG338197AG338198
length1,201709
length of high quality
(start - end)
408 (471 - 878)590 (72 - 661)
definitionCHROMAT_FILE: MSMg01no130_h03.b1 PHD_FILE: MSMg01no130_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:14 2005CHROMAT_FILE: MSMg01no130_h03.g1 PHD_FILE: MSMg01no130_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTATTTTNNNNNNAGCAATGGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCACATTTTTCATCCCTTTTCTAAAGTAGATTGATG
ACCATTACCTGCCAGAACCCTTAATCCTGCCCAAAAGTAATAAGGAGGTC
ATCTTCTTTCAATGTTAATGGGATCTGTGAGGTATGCATGACAATATCCT
CCATAGTCTCAGACACATGAACACTTGGCCCTCCATTGGGGATACTGTAT
GGGGAGATCTAGGAGGTATGGCTTTGACTGGGGGGTAGGCTTTAAGAGTC
ATACTGTGTGCCAAATCAAGATTGCACTAACTCTGTTTCCTGCTTCCAGT
TGGAGATGTGGGCTCTTAGCTTCCTGCTGCAGGTGCCATGGCAGCTTTAT
CTGCTTTCATGCTGCCTGTCCCAGTATGGACTGAAATCCTCTTATAATAA
GCTCAAATAAACACTTCCTTCTATAGGTTGCCTTGATCATGTTTCTTTTC
TTTTTATCACAATATCAGTAAAGGAATTAAAATAGAGGCCAAATCAGGAA
CTTGGATATCCACAACTATCTGGCAGTTACCTGGTGGCTGAGAGTGTAAG
AGGGTATGAAGGTGTGGGCCAGTCTCAGGTGTTGCCCCATGTTTAATTCT
GGAGCAGAAAATTAGCAAGAACAATGACCTCCAGGAATAAGAAAGTTCAC
ATCTCCTTCATTATGAAGCAATTTTCAGGGCCAGAGAGATGACTCTACAA
GTGAAGGGGTCAGCCACACAACTCAAATCAAGTTCAATCTCCAGAAATAA
CAAGAAAAAAATGTTGAAATGGATGCCTGCATCTGTACTTCAGCGATATG
GGAGACAATGATATAAAAATTACCTGGAACCTCATGGATCAGCTAGCTGC
AGAACTGAGAGAGATGGAAGTCATGAACTGACCATTGAAAATTGTTCCCT
GACCTCCACAAGCATGGTATGGTATGGCATGTATACATCTGGTTCACAAA
CACACACTCACATATATAAATATATATCTCACCCCATGCCCCGAAAAGTA
TTTCTAAATCCTAAACTATAAGTATAAATGGGACCTTCCGTATTAAATTT
GAGATTATCCCTGCGGCTTTTTTTTTGGTTCCACCCCCAAAAAACCCAAA
AGGTTAAAGGGGGGGGGAAGGGCATAACCCCCCGCCTCTTGTTGTGTAAA
G
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCCCGCGGAATTAATTTGTTGTAGTTTTCTGTCTTCATTTGT
TGCAAGCAAAATTTCCTTAGTGAGGGGGAAGGGTTACACTTATCTGATGC
TATAAGGACAGAGACTTGAAATGTAGTTATGGATTATGCTGGTTTAGCAA
AGTACTGGTTGTAGGTTTGTCTTCAAGATCCATGACTTTACTAGCTCTGG
GTAGTAGATTAAATTTTCAGACCAGGCATGGTTTCCCTTTTGTTGATTGG
GCTTTCCAATTAGAAAGCTGTTGGTTACTACCAAGATAATCATGCCACTA
CTGCTTCTTTAGGGTACTGTGCCATGCTGGTATTTGCAGTGGTTCATAGG
CATCATAGTTCAGTAGGACAGTTAGTTATTTCCCTCCTTTGGAATGCCTT
CTGGTGGCATTTAGGTTAGTCCTAGTTCAGGAGCCACTGGGCTCTGTGTC
TTTCTTAAGTGCATGGTTTCTTTAGCAATAGGGACTTACCTTCCATGTCT
ACGGTGTAATCAAAGGCAGCTGCAATAGTCTGTAATGTTTTGGGACTCTC
TTGAATATAGATCAGTGGACGTCACTTTGGACAATCAGAGAGAGCAAACC
CAGACAAATCTCAGAGGTATGGCAGATTCTGATCAAGAATGGCTCCTTTC
TTAGCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_h03.b1 MSMg01no130_h03.b1 CHROMAT_FILE:
MSMg01no130_h03.b1 PHD_FILE: MSMg01no130_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:14 2005
         (408 letters)



>mm_chr15_63407089_63407898
          Length = 810

 Score =  723 bits (374), Expect = 0.0
 Identities = 401/410 (97%), Gaps = 2/410 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctataggttgccttgatcatgtttcttttc-tttttatcacaatatcagtaaaggaatta 59
           |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 201 ctataggttgccttgatcatgtttcttttcttttttatcacagtatcagtaaaggaatta 260

                                                                       
Query: 60  aaatagaggccaaatcaggaacttggatatccacaactatctggcagttacctggtggct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatagaggccaaatcaggaacttggatatccacaactatctggcagttacctggtggct 320

                                                                       
Query: 120 gagagtgtaagagggtatgaaggtgtggg-ccagtctcaggtgttgccccatgtttaatt 178
           ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct: 321 gagagtgtaagagggtatgaaggtgtgggcccagtatcatgtgttgccccatgtttaatt 380

                                                                       
Query: 179 ctggagcagaaaattagcaagaacaatgacctccaggaataagaaagttcacatctcctt 238
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ctggagcagaaaattagcaagaacaatgacctccagaaataagaaagttcacatctcctt 440

                                                                       
Query: 239 cattatgaagcaattttcagggccagagagatgactctacaagtgaaggggtcagccaca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattatgaagcaattttcagggccagagagatgactctacaagtgaaggggtcagccaca 500

                                                                       
Query: 299 caactcaaatcaagttcaatctccagaaataacaagaaaaaaatgttgaaatggatgcct 358
           ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 caactcaaaccaagttcaatctccagaaataacaaggaaaaaatgttgaaatggatgcct 560

                                                             
Query: 359 gcatctgtacttcagcgatatgggagacaatgatataaaaattacctgga 408
           |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 gcatctgtacttcagcgatatgggagactatgatataaaaattacctgga 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 810
Length adjustment: 9
Effective length of query: 399
Effective length of database: 801
Effective search space:   319599
Effective search space used:   319599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)