BAC Information

Click to search

BAC

Clone NameMSMg01-131I12
Chromosome15 (Build37)
Map Location 92,110,472 - 92,110,822
singlet/doubletsinglet
Overlap geneCntn1
Upstream geneSlc2a13, Lrrk2, Muc19, Smgc, LOC100042529
Downstream genePdzrn4, LOC100042552, LOC100043283, Glt8d3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131I12.T7 (MSMg01no131_i12.b1)MSMg01-131I12.TJ (MSMg01no131_i12.g1)
ACCAG339011AG339012
length701746
length of high quality
(start - end)
627 (73 - 699)97 (159 - 255)
definitionCHROMAT_FILE: MSMg01no131_i12.b1 PHD_FILE: MSMg01no131_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:47 2005CHROMAT_FILE: MSMg01no131_i12.g1 PHD_FILE: MSMg01no131_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTACATTCTGAAAGATTTTGAGCACCATTGCCTTCATTGAT
ATACAAGGTCAATGATTTTTTCCATCTTAACAAATATTTGTGTTCCAAAT
AACACAAAAATGGGTGACTTAACTTATTCCTAATGAGTACTAATTATCAT
GGTTTATTTTGATGGCCAAGTTGACAAGTCCTAGAGTCACAAGGCTTCTA
GGCTTGTCTGGGAAGGTTTATCTAGGTCAGGCTATTGAGGTGAGAAGATC
CACCTTAATTGAAGGCAGCACCATCCCATGACTCTAAAATGAGTTGATCA
CCAACATGCATTGGTCTCTTCATCCTGGCTGCGGATGCATGGTCATAATG
CATGGCCTCATGCTCCTGCCACTGTGCCTTCTATGACATCCCTACCCTGA
TAGACTCTACCCTGGAACTGTGAATCCAAACACCTACCCTCTTTCAATGT
TGCTTTTATTAGGTATTATTGTTGCAGTAATGGAAAAGGTAACTGATAAC
AAATAAGACCAGATTTACTGATCCCCTCAATGCTTTAAAGATATCCACAG
GGATGGCTCACAAATCTCACTCAGGCACTCACTTGATGAAGCAACCTGAA
ATGCCCCATGGGTTTGTAGCTTAGGTTCTTCAGGGTGTGGTCAGCAAGTT
C
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGAAATTCCAGAGGCTGAAATAAGAGGGTATTGC
ATTTGAGTCCAGTCTAAATATCTCACTGATTTTAGACCTGCTTGGGCCAC
ATAGAAAGACTATCAAAAGAAAAAGAGGATAGCCTTAACATTTATTGAAA
ATGTTCAATACACGGAGAGTGTCTGAGAGTAGAGCTAAACAGAACTTCTA
ACAAATACTCTGATAAAAGTCTTTACTGTGCCAGAATACTCAGCTCATGG
AAAGAGCGTGGCTTGATATTTGCCTATTATATATTCGGATGAGACCTTTA
CAGGAGAGCATCAATGCCAAATACCGCTATTTTTAATTAAGCCATATTTT
AACCATTTTGCTGCGATACCATCACCCCCTTTGGCACACTAACTATTTTA
AACTTTTTAAATGATAGAATACCCTTCTAATATTTTTTGGTGCTGCGTTT
TCTACTTCTTGAATGCCTACCCCTCTTATAAATAATATAAATATCATTTA
AGTAAAAACCCTTACCTATTTTCAATTGGACTGAAATAACTGACTCTTGC
CTTGAAGTACAGATCCTTCCGTTTAATTTCAGAGCCAACATCTTAGTATT
CCTCCACTGTCGCCTTTCCTGGCCAGGAAACTATAGGCCAGTGCATCCCC
TTCATCATATACTTTTGAACATTCATTATAGTGCACTTTTCTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_i12.b1 MSMg01no131_i12.b1 CHROMAT_FILE:
MSMg01no131_i12.b1 PHD_FILE: MSMg01no131_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:47 2005
         (627 letters)



>mm_chr15_92109796_92110822
          Length = 1027

 Score =  663 bits (343), Expect = 0.0
 Identities = 349/351 (99%)
 Strand = Plus / Minus

                                                                        
Query: 277  caccaacatgcattggtctcttcatcctggctgcggatgcatggtcataatgcatggcct 336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 caccaacatgcattggtctcttcatcctggctgcggatgcatggtcataatgcatggcct 968

                                                                        
Query: 337  catgctcctgccactgtgccttctatgacatccctaccctgatagactctaccctggaac 396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967  catgctcctgccactgtgccttctatgacatccctaccctgatagactctaccctggaac 908

                                                                        
Query: 397  tgtgaatccaaacacctaccctctttcaatgttgcttttattaggtattattgttgcagt 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907  tgtgaatccaaacacctaccctctttcaatgttgcttttattaggtattattgttgcagt 848

                                                                        
Query: 457  aatggaaaaggtaactgataacaaataagaccagatttactgatcccctcaatgctttaa 516
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 847  aatggaaaaggtaactgataacaaataagaccaggtttactgatcccctcaatgctttaa 788

                                                                        
Query: 517  agatatccacagggatggctcacaaatctcactcaggcactcacttgatgaagcaacctg 576
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 787  agatatccacagggatggctcacaaatctcactcacgcactcacttgatgaagcaacctg 728

                                                               
Query: 577  aaatgccccatgggtttgtagcttaggttcttcagggtgtggtcagcaagt 627
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727  aaatgccccatgggtttgtagcttaggttcttcagggtgtggtcagcaagt 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)