BAC Information

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BAC

Clone NameMSMg01-132M09
Chromosome15 (Build37)
Map Location 70,457,017 - 70,457,656
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051, 1700010C24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132M09.T7 (MSMg01no132_m09.b1)MSMg01-132M09.TJ (MSMg01no132_m09.g1)
ACCAG339923AG339924
length723714
length of high quality
(start - end)
675 (49 - 723)637 (73 - 709)
definitionCHROMAT_FILE: MSMg01no132_m09.b1 PHD_FILE: MSMg01no132_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:23 2005CHROMAT_FILE: MSMg01no132_m09.g1 PHD_FILE: MSMg01no132_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGAGCCG
CGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAAC
CAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTA
AAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACAT
AGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGG
GGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGAT
ATGATAGTATATATAAGTGACCCCAAAAATTCCACCAGAGAACTCCTAAA
CCTGATAAACATCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACA
AGTCAATGGCCTTTCTCTGTACAAAGAATAAACAGGCTGAGAAAGAAATT
AGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGG
CGTGACTCTAACTAAGGAAGTGAAAGATCTATATGATAAAAACTTCAAAT
CTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCA
TGCTCATGGATTGGCAGGATCAACATTGTAAAAATGTCTATCTTGCCAAA
AGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCT
TCAACGAATTAGAAGGAGCAATT
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGGAATTTTTCTGCTAGGATGACAGAG
CGCTGGATCTGGGGGAAAGGACTGGCCTTAGATCTAATGAAGATAAGTTA
ACACTTGAGTTTCAAAATTCATCTGTCCAATATATGATCATGAAGTGTGA
CCAGTTAACATGTTATTTTTCCTTTGCTTCCTTAAAAACTTAATTTTTCC
GTGCCTCATTTTGCTTGATGTTACATTCACTGAAGACATGTCTTGATGTG
AATAGATTACAAGTTTGCACATGGGAACATATAGCATAATTCTAGGTAAC
TTGAAGAAATACCAAGTGTAATAAATGATTTCCTTAATATGTATAGCCAG
AATCGAGGTCATAGAGCATAATATTTAACCTAGTAAGTCATTATGCCAAG
TGGGCATGTTCTAAAGCTGCCTTCTACTTATTTCTGCTCATGAGCATAGA
TAAATACTTCCTTTGACCTTTGTTAGAGAAGCTTCTCTTTGCTGTAGATG
ATGGTTAAAGTGGACTGCTGTCTTCTGAGCATGCCATTCCCTTTGGACAC
ATCAACTCCCAGATGCTGTAGTCATCTCCATCAAACCTACACATTATGAC
CAGCACATAGGGGAGAGGGGTGATGGAAGCTCTGCTCCATTTAGACAACC
TTCAGACAATTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_m09.g1 MSMg01no132_m09.g1 CHROMAT_FILE:
MSMg01no132_m09.g1 PHD_FILE: MSMg01no132_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:23 2005
         (637 letters)



>mm_chr15_70456817_70457853
          Length = 1037

 Score = 1160 bits (600), Expect = 0.0
 Identities = 629/640 (98%), Gaps = 3/640 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggaatttttctgctaggatgacagagcgctggatctgggggaaaggactggccttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggaatttttctgctaggatgacagagcgctggatctgggggaaaggactggccttaga 260

                                                                       
Query: 61  tctaatgaagataagttaacacttgagtttcaaaattcatctgtccaatatatgatcatg 120
           ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgatgaagataagttgacacttgagtttcaaaattcatctgtccaatatatgatcatg 320

                                                                       
Query: 121 aagtgtgaccagttaacatgttatttttcctttgcttccttaaaaacttaatttttccgt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgggaccagttaacatgttatttttcctttgcttccttaaaaacttaatttttccgt 380

                                                                       
Query: 181 gcctcattttgcttgatgttacattcactgaagacatgtcttgatgtgaatagattacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctcattttgcttgatgttacattcactgaagacatgtcttgatgtgaatagattacaa 440

                                                                       
Query: 241 gtttgcacatgggaacatatagcataattctaggtaacttgaagaaataccaagtgtaat 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttgcacatgggaacatataacataattctaggtaacttgaagaaataccaagtgtaat 500

                                                                       
Query: 301 aaatgatttccttaatatgtatagccagaatcgaggtcatagagcataatatttaaccta 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 aaatgatttccttaatatgtatagccagaatcgaggtcatagagcataatgtttaaccta 560

                                                                       
Query: 361 gtaagtcattatgccaagtgggcatgttctaaagctgccttctacttatttctgctcatg 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 gtaagtcattatgccaaatgggcatgttctaaagctgccttctacttatttgtgctcatg 620

                                                                       
Query: 421 agcatagataaatacttcctttgacctttgttagagaagcttctctttgctgtagatgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcatagataaatacttcctttgacctttgttagagaagcttctctttgctgtagatgat 680

                                                                       
Query: 481 ggttaaagtggactgctgtcttctgagcatgccattccctttggacacatcaactcccag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggttaaagtggactgctgtcttctgagcatgccattccctttggacacatcaactcccag 740

                                                                       
Query: 541 atgctgtagtcatctccatcaaacctacaca---ttatgaccagcacataggggagaggg 597
           |||||||||||||||||||||||||||||||   || |||||||||||||||||||||||
Sbjct: 741 atgctgtagtcatctccatcaaacctacacaacattgtgaccagcacataggggagaggg 800

                                                   
Query: 598 gtgatggaagctctgctccatttagacaaccttcagacaa 637
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtgatggaagctctgctccatttagacaaccttcagacaa 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)