BAC Information

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BAC

Clone NameMSMg01-133L18
Chromosome15 (Build37)
Map Location 24,443,466 - 24,443,695
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666989
Downstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133L18.T7 (MSMg01no133_l18.b1)MSMg01-133L18.TJ (MSMg01no133_l18.g1)
ACCAG340632AG340633
length714702
length of high quality
(start - end)
232 (117 - 348)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no133_l18.b1 PHD_FILE: MSMg01no133_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:37 2005CHROMAT_FILE: MSMg01no133_l18.g1 PHD_FILE: MSMg01no133_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCATG
ATTTTCCGAATGAGTCCGTCCAGAAGAATCTTTTTGATGGTTAGTACACT
CTTGTTTTTGTCCTAGATGAAGGACAAAGAAATCGTCAGAACAGGACTGA
TGTGTCAGATCTCTGGCTCTGGGAATGTTATCCTTTGTGCTTAGTATCCT
AAATTTTCTAAAAATGCACATGAATGAGGTTGGTTTCAAAGCTGTCTCAC
GTCAGTAATCAGAACACCTCATTCTACAAACTATTAACATTTTTAAATTC
AATTTATGTCTTGATCACAGCTCCCTCCCTTTTCTCCTCCTAATCCTTTT
CTCCTTTGCCTCCCCCACCTCTCCTCAGAGAAGGGGAGTTCCCCTGGTGT
ACCACCTCACACTGAAAAAATATTTCCAGCAGGTATAGGCATGCCATCTC
CTCCTGGGGACCTACCAGGCAGTCCAAGTATGGGCCCAGGGATACAATGT
GAAGGAACAAAGATAGAGGCAGCCTCAGTTCCACTTATTCAGGGTTTCAC
ATGAACACTAAGCTGCTCATTTGTTACGAATATGCAGGGGTCTAGGTCTA
GCTCTTGCATGCTCCCTGGTTGGTGCCCCAGGCTCTGCTAGACTCCATGA
CTTCAGGCTAGTTGACTCTGTGGCACTTCCCGCTGCCGCTTTGACCCCTC
CAGCTTGCCAACTA
NTTCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTAAGGAATACAGAATGGCTGAGAA
GCACCTGAAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGGTTCCATCTCACACCAGTCAGAATGGCTAAGATCAA
AAACTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAAGAACAC
TCCTCCATTGTTTGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTATTGGATGATCCTGC
AATACCTCTCCTGGGCATTTATCCAGAAGATGTTCCAACTGGAAGAAAGA
CACATGCTCCACTATGTTAATATTAGCCTTATTTGTAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCTCAACAGAGGAACAGATACCAAAATGTGGTA
CATTTACTCAATGGAGCACTACTCAGCTAATAAAAAGAATGAATTCATGA
AATTCCTAGGCAAATGGATGGACCTGGACGGCATCATCCTGAGTGAGGCA
ACCCAATCACACAATAACTCAAATGATATGTACTCACTGATAAGTGGATA
TTATCCCACAATCTTATAATTCCCAAGACATCCGATACAACTTGCGAAAC
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_l18.b1 MSMg01no133_l18.b1 CHROMAT_FILE:
MSMg01no133_l18.b1 PHD_FILE: MSMg01no133_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:37 2005
         (232 letters)



>mm_chr15_24443266_24443897
          Length = 632

 Score =  402 bits (208), Expect = e-117
 Identities = 225/232 (96%), Gaps = 4/232 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaggacaaagaaatcgtcagaacaggactgatgtgtcagatctctggctctgggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atgaaggacaaagaaatcgtcagaacaggactgatgtgtcagatctctggctctgggaat 371

                                                                       
Query: 61  gttatcctttgtgcttagtatcctaaattttctaaaaatgcacatgaatgaggttggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 370 gttatcctttgtgcttagtatcctaaattttctaaaaatgcacataaatgaggttggttt 311

                                                                       
Query: 121 caaagctgtctcacgtcagtaatcagaacacctcattctacaaactattaacatttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 310 caaagctgtctcacgtcagtaatcagaacacctcattctacaaactattaacattttaaa 251

                                                               
Query: 181 attcaatttatgtc--ttgatcacagctccctcccttttctcctcctaatcc 230
           ||||||||| ||||  |  |||||||||||||||||||||||||||||||||
Sbjct: 250 attcaatttgtgtccat--atcacagctccctcccttttctcctcctaatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)