Query= MSMg01no134_a02.b1 MSMg01no134_a02.b1 CHROMAT_FILE:
MSMg01no134_a02.b1 PHD_FILE: MSMg01no134_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:59 2005
(662 letters)
>mm_chr15_42294610_42295669
Length = 1060
Score = 1187 bits (614), Expect = 0.0
Identities = 650/662 (98%), Gaps = 2/662 (0%)
Strand = Plus / Plus
Query: 1 acagttggctttgtaaacttatttttttttcctttcaggaggaagcaactgaacagaaaa 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 201 acagttggctttgtaaacttatttttttt-cctttcaggaggaagcaactgaagagaaaa 259
Query: 61 acactgtaagttgcctttagaaaccaaattttaatttcatgcacctcacctagaaaactt 120
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acactgcaagttgcctttggaaaccaaattttaatttcatgcacctcacctagaaaactt 319
Query: 121 tctaaatgagcagtttgactacaaggaagcaatatggatattggagaagtagggggaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctaaatgagcagtttgactacaaggaagcaatatggatattggagaagtagggggaggg 379
Query: 181 agaaaaaccatctaatggccacgtgtgatgaagcagaaacaactgcttcctcaataagtt 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaaaa-ccatctaatggccacgtgtgatgaagcagaaacaactgcttcctcaataagtt 438
Query: 241 gacagataggccaaaagggggaaatggaagtaggttcccacattagtaaactgttgggta 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 439 gacagataggccaaaagggggaaatggaagtgggttcccacattagtaaactgttgggta 498
Query: 301 gtttatcagacaccaccacatatctgatgtggggaacaacggcttggcttggattaagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtttatcagacaccaccacatatctgatgtggggaacaacggcttggcttggattaagta 558
Query: 361 accagtccccttatctccgctacacttgaatactcactttgacatacagtttcagtggga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 accagtccccttatctccgctacacttgaatactcactttgacatacagtttcagtggga 618
Query: 421 ctttctgcttcaattaagagactcagtttccccatgtgcaaatcagcggttaagtgtgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 619 ctttctgcttcaattaagagactcagtttccccatgtgcaaatcagcggttaagtgttca 678
Query: 481 gtgttataaaaataacaactatccgagacgcttgagtgttcacacaggagcagcacttaa 540
||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||
Sbjct: 679 gtgttataaaaatgacaactatctgagatgcttgagtgttcatacaggagcagcacttaa 738
Query: 541 ggaaaacctactgagaggatctgtcacagtacacagtctctctctgcttcctgcttttct 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 739 ggaaaacctactgagaggatctgtcacagtacacagtcactctctgcttcctgcttttct 798
Query: 601 tctgtaagatgacaagttatttgagggcacaggtatcctcctactctgtatgatctaatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tctgtaagatgacaagttatttgagggcacaggtatcctcctactctgtatgatctaatt 858
Query: 661 at 662
||
Sbjct: 859 at 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1060
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1050
Effective search space: 684600
Effective search space used: 684600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_a02.g1 MSMg01no134_a02.g1 CHROMAT_FILE:
MSMg01no134_a02.g1 PHD_FILE: MSMg01no134_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:59 2005
(746 letters)
>mm_chr15_42447616_42448761
Length = 1146
Score = 1373 bits (710), Expect = 0.0
Identities = 738/750 (98%), Gaps = 8/750 (1%)
Strand = Plus / Minus
Query: 1 gctttcatacttcaagctcgcattggctcctt--ggaaaaatgcaaataattaaccctga 58
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 946 gctttcatacttcaagctcgcattggct--ttaaggaaaaatgcaaataattaaccctga 889
Query: 59 agtaagaggcatttcacctcagactcttcctgctgggttaacaaacatctcacagaaagg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 agtaagaggcatttcacctcagactcttcctgctgggttaacaaacatctcacagaaagg 829
Query: 119 gag--ctctctgggagtgtctcactaggtgtcattattgattagtgacacctattctctt 176
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gagctctctctgggagtgtctcactaggtgtcattattgattagtgacacctattctctt 769
Query: 177 aggaaagcctttggaaatgtagagcttcaagggggtttgataattagggatgaagttttc 236
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 768 aggaaagcctttggaaatgtagagcttcaagggggtttgataattggggatgaagttttc 709
Query: 237 agttgctttttgtccaaatttgttaactgaactgttaagtgatgagatgcccattaggag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 agttgctttttgtccaaatttgttaactgaactgttaagtgatgagatgcccattaggag 649
Query: 297 acttgcctgggaagtctctgtgttaccctcagtagccagccattcctgctcccaggactc 356
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 acttgcctgggaag--tctgtgttaccctcagtagccagccattcctgctcccaggactc 591
Query: 357 tctatgcttcatattctaaaggaccctttctcaattcccatcaaaacactgccagggggc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tctatgcttcatattctaaaggaccctttctcaattcccatcaaaacactgccagggggc 531
Query: 417 tgatagggcacagtgtcatctcatgacttgacttataaccagaatcagcaccagttaatt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgatagggcacagtgtcatctcatgacttgacttataaccagaatcagcaccagttaatt 471
Query: 477 agaatgattggtagctagctatccttaagtaacctgattatccaattctctgatgttgat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agaatgattggtagctagctatccttaagtaacctgattatccaattctctgatgttgat 411
Query: 537 tttacctgatttgattttaaatagctcaatgatggtatagtgtggcacaaatgatttaaa 596
||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||
Sbjct: 410 tttacctgatttgattttaaatatctcaatgattgtatagtgtagcacaaatgatttaaa 351
Query: 597 atatcccaaaatatcttagatttaaaaataaaaacccatgtaatatttataaatgaggta 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atatcccaaaatatcttagatttaaaaataaaaacccatgtaatatttataaatgaggta 291
Query: 657 gttataaaaatttgataaaaggaatgtgtaatggacagatttccctttaccgcatcctct 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gttataaaaatttgataaaaggaatgtgtaatggacagatttccctttaccgcatcctct 231
Query: 717 gaaggcatggaagttgctctcttatgtaac 746
||||||||||||||||||||||||||||||
Sbjct: 230 gaaggcatggaagttgctctcttatgtaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1146
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1136
Effective search space: 836096
Effective search space used: 836096
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
