Query= MSMg01no134_n03.b1 MSMg01no134_n03.b1 CHROMAT_FILE:
MSMg01no134_n03.b1 PHD_FILE: MSMg01no134_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:37 2005
(698 letters)
>mm_chr15_92436657_92437754
Length = 1098
Score = 961 bits (497), Expect = 0.0
Identities = 554/573 (96%)
Strand = Plus / Minus
Query: 126 ttccctaataggttcgtgattgtgtcaataaaaaaggcagaagctaattgttggacaaaa 185
||||||||||||||| |||||||||||||||| |||||||||||||||| |||| |||||
Sbjct: 1098 ttccctaataggttcatgattgtgtcaataaagaaggcagaagctaatttttgggcaaaa 1039
Query: 186 agaaagaggtgggtcttccgggtcccaggagaaggagaggaggtaaaggggagggaattt 245
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 1038 ggaaagaggtgggtcttccgggtcccaggagaaagagaggagggaaaggggagggaattt 979
Query: 246 gaaccaggctttgcattgagtaggaaactgcagacatgtaagttttggtgcacctagagt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 gaaccaggctttgcattgagtaggaaactgcagacatgtaagttttggtgcacctagagt 919
Query: 306 ttgtagccttggctgcttgtagaggccaaagaggatggagggagctggtagataaaatta 365
|||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 918 ttgtagccttggctgcaggcagaggccaaagaggatggagggagctggttgataaaatta 859
Query: 366 aggcaggaaattcttcgtccagcctttgagtcatctggctagttttaagataataaaact 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aggcaggaaattcttcgtccagcctttgagtcatctggctagttttaagataataaaact 799
Query: 426 gtctagtattttctatccatggagctaaggtgggcaggaggagagagagtgcagcagagg 485
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gcctagtgttttctatccatggagctaaggtgggcaggaggagagagagtgcagcagaga 739
Query: 486 tagtggttagcagcttggcaagtttagccagaaggaatgggccaattggaagtaaggctg 545
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 738 tagtggttagcagcttggcaaggctagccagaaggaatgggccaattggaagtaaggctg 679
Query: 546 gcccaggaagggaggtagtgagggctggcgggagcatgatctcagagctaagccaagagc 605
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 678 gcccaggaagggaggtagtgagggctggtgggagcatgatctcagagctaagccaagagc 619
Query: 606 acagctcaggcaaagaagcaagcatgttttataaaattatatgcaacacacacaaattgg 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acagctcaggcaaagaagcaagcatgttttataaaattatatgcaacacacacaaattgg 559
Query: 666 catcagactcatgactgcctgtatgagctgttc 698
|||||||||||||| |||||||| |||||||||
Sbjct: 558 catcagactcatgattgcctgtacgagctgttc 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_n03.g1 MSMg01no134_n03.g1 CHROMAT_FILE:
MSMg01no134_n03.g1 PHD_FILE: MSMg01no134_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:37 2005
(657 letters)
>mm_chr15_92342626_92343682
Length = 1057
Score = 808 bits (418), Expect = 0.0
Identities = 623/772 (80%), Gaps = 139/772 (18%)
Strand = Plus / Plus
Query: 1 taatgtcagcatcacagaggtgaatcatttgagagtccctaactggtgctgtgctctgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgtcagcatcacagaggtgaatcatttgagagtccctaactggtgctgtgctctgga 260
Query: 61 tgttgttatccctcaaagttccatatcccgaaggctatgttctccagccatactgctggg 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgctatccctcaaagttccatatcccgaaggctatgttctccagccatactgctggg 320
Query: 121 aaatgtgaacatttagcagat-gggggtctcaggagaacgcttaaggacactgtaggtat 179
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 -aatgtgaacatttagcagatggggggtctcaggagaacgcttcaggacactgtaggtat 379
Query: 180 gtattcaaaggtttgctacacactctcatcgttcttgtcctgcatagtcattggaagccc 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 380 gtattcaaaggtttgctacacactctcatcattcttgtcctgcatagtcattggaagccc 439
Query: 240 aaagcaatggggaatgtctgatcttatactgaaaaccctacagtttgcactaaagcaaac 299
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 aaagcaatggggaatgtctgatcttatactggaaaccctacagtttgcactaaagcaaac 499
Query: 300 ctttctctttataaattatccaagactttttcttttctttctccctttcttcctttc--- 356
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 500 ctttctctttataaattatccaagactttttcttttctttctccctttctccctttctcc 559
Query: 357 ----ct---ttt------------------------------------------------ 361
|| |||
Sbjct: 560 cattctccctttctctctctctctctctctctctctctctctctctctctctctctctct 619
Query: 362 -----ttt-tt-tt-ttaaatt-------------------------------------- 375
||| || || || ||
Sbjct: 620 ctctctttcttcttcttc--ttcttcttcttcttcttcttcttcttcttcttcttcttct 677
Query: 376 --ttttttgggntttca-----agacagggtttttctgtgtagccctgactttcctggaa 428
|||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 678 tcttttttgg--ttt--ttttgagacagggtttttctgtgtagccctggctttcctggaa 733
Query: 429 ctcactttgtagaccaggctggcctcgaactcagaaatccgtctgcctctgcctcccgag 488
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 734 ctcactttgtagaccaggctggcctcgaactcagaaatccgtctgcctctgcctccagag 793
Query: 489 tgctgggattaaagtcgtgtgccaccttgcccagntatcgctctctctctctctctctct 548
|||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 794 tgctgggattaaagtcgtgtgccaccatgccc-g-----gctctctctctctctctctct 847
Query: 549 ctctctctctctctctctctctc--tctttctttgnnaa-gggaagccaatgaatatggg 605
||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct: 848 ctctctctctctctctctctctcagt-----------aatgggaagccaatgaatatggg 896
Query: 606 ctaacaagtgagaaaggatctataagagaaagatcataccaactagggaact 657
||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 ctaacaaatgagaaaggatctataagagaaagatcataccaactagggaact 948
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 43
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
