BAC Information

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BAC

Clone NameMSMg01-135J06
Chromosome15 (Build37)
Map Location 45,167,358 - 45,167,930
singlet/doubletsinglet
Overlap genenone
Upstream geneNudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135J06.T7 (MSMg01no135_j06.b1)MSMg01-135J06.TJ (MSMg01no135_j06.g1)
ACCAG342002AG342003
length695700
length of high quality
(start - end)
627 (69 - 695)631 (70 - 700)
definitionCHROMAT_FILE: MSMg01no135_j06.b1 PHD_FILE: MSMg01no135_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:44 2005CHROMAT_FILE: MSMg01no135_j06.g1 PHD_FILE: MSMg01no135_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGATGGGCGGATTCAC
TGTGGTGTGCGTAAAAAATTCTGATGATGCCAAGTCATCTTGGTTTCTTT
TAGTAAGATTCTCAACATTTGCCTTTCGCCATCTGGTAACCTCTGGTGTT
AGATGTTCTAGCTGCCTCTGGCTGGAGGGTGTTCCTCCTGTGAATCTGTT
AACTTCTGTCAGCACTACTGGGAGTCCAACTCTCTCCTGAGACCCAGTGG
TCAGAACTCTCTTTGCAGGCAAGCTCTGCTGTTGCAGGGTAGAGGCACAG
AGTTCTGGAGCTCATATTTTTTTCCTGGCTAAAAATGAAGGCCCGAAGGA
ACCATATCCAAGAAGCTCTGTTGCTTCTGTGGCCCACGTGTTCTCCTGCA
CAGACTGATCTCTGAGAGACAGGGAATACAAGATCTCATTTCTTGATATA
GATTTACTCTCAGTTAAATCAAAGCTCCTATGAATCATATGCTTTATTTG
TTAATATGTAAAGTATCTTCATTTAAAAATACCATCTGAAAACTTATTTT
TATTGTGAAACATAATACTCTATAGCAGTTAACAAAAATAAAATTTTTTA
AAATGAAACATATTCCACCCCACAATATTCAATTCATTACCATGGACTAC
TCCTATTTTAAGATTGTCTCTTGAATTGATTCACTTTTCTCTATT
TGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTAGAGTCCAGGTTTCTCTGTAATCCTGTA
GTTCTGGGATCCTGTGAACCTGAGATTCTGGGTGTGTCAGAGTTCTTGGC
CATTAAGCTTCCTCTGAGACCCTGAGATCCTGGTGTGACCAAGCTCCAGG
GATGCTGGGAACTTGGAATCCTAAGATTTTGGGTGTGTTACAGTGCCTGG
AAGTGGTACCTCCTCTGGGGACCGAGTGGCTGTGTTCGAAACCAAGTTCA
GAACAGAGTCTGAAGGAATGGCCATACAAAGACTGCCCCACTTGGGGATT
CATTGCATAAACAACCACCAAACCCAGACACTATTGCAGATGCCAACAAG
AGCCTGCTGGCAGGAGCCTGATATAACTGTCTTCTGCAGGCCTTTGCCAG
TGCCTGGAATATACAGAATTGGAATCTCACAATCATCCATTGGACGGAGC
ATAAGGTCCCCAATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGG
GTCTGATGCCCCATAGGGTGAATGTCAATATGAACTAACCAGTACCCCGA
GAGCTCCTTGGAACTAAACCACCAATTAAAAAAAACAAAACAAAAACAAA
AACAAAAAAACAAACAAACAAAAAACACCATGATGGGACATGTGGCTCTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_j06.b1 MSMg01no135_j06.b1 CHROMAT_FILE:
MSMg01no135_j06.b1 PHD_FILE: MSMg01no135_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:44 2005
         (627 letters)



>mm_chr15_45166904_45167930
          Length = 1027

 Score = 1007 bits (521), Expect = 0.0
 Identities = 560/573 (97%)
 Strand = Plus / Minus

                                                                        
Query: 55   ctttcgccatctggtaacctctggtgttagatgttctagctgcctctggctggagggtgt 114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1027 ctttcgccatctggtaacctctggtgttagatgttctagctgcctctggctggagcgtgt 968

                                                                        
Query: 115  tcctcctgtgaatctgttaacttctgtcagcactactgggagtccaactctctcctgaga 174
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 967  tcctcctgtgaatctgttaacctctgtcagcactactgggagtccaactctctcctgaga 908

                                                                        
Query: 175  cccagtggtcagaactctctttgcaggcaagctctgctgttgcagggtagaggcacagag 234
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 907  cccagtggtcagaactctctttgcaggcaagctctgctgttgcagggaagaggcacagag 848

                                                                        
Query: 235  ttctggagctcatatttttttcctggctaaaaatgaaggcccgaaggaaccatatccaag 294
            |||||||||||| || |   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 847  ttctggagctcagatctgcctcctggctaaaaatgaaggcccgaaggaaccatatccaag 788

                                                                        
Query: 295  aagctctgttgcttctgtggcccacgtgttctcctgcacagactgatctctgagagacag 354
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 787  aagctctgttgcttctgtggcccacgtgctctcctgcacagactgatctctgagagacag 728

                                                                        
Query: 355  ggaatacaagatctcatttcttgatatagatttactctcagttaaatcaaagctcctatg 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727  ggaatacaagatctcatttcttgatatagatttactctcagttaaatcaaagctcctatg 668

                                                                        
Query: 415  aatcatatgctttatttgttaatatgtaaagtatcttcatttaaaaataccatctgaaaa 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667  aatcatatgctttatttgttaatatgtaaagtatcttcatttaaaaataccatctgaaaa 608

                                                                        
Query: 475  cttatttttattgtgaaacataatactctatagcagttaacaaaaataaaattttttaaa 534
            |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 607  cttatttttattgtgaaacataatactctatagcagttaacaaaaataattttttttaaa 548

                                                                        
Query: 535  atgaaacatattccaccccacaatattcaattcattaccatggactactcctattttaag 594
            |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 547  atgaaacatattccaccccacaatattctattcatcaccatggactactcctattttaag 488

                                             
Query: 595  attgtctcttgaattgattcacttttctctatt 627
            |||||||||||||||||||||||||||||||||
Sbjct: 487  attgtctcttgaattgattcacttttctctatt 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)