BAC Information

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BAC

Clone NameMSMg01-136I06
Chromosome15 (Build37)
Map Location 87,860,005 - 87,860,315
singlet/doubletsinglet
Overlap genenone
Upstream geneAW049604, LOC100042329
Downstream geneLOC100042340, Zdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136I06.T7 (MSMg01no136_i06.b1)MSMg01-136I06.TJ (MSMg01no136_i06.g1)
ACCAG342694AG342695
length681732
length of high quality
(start - end)
331 (55 - 385)---
definitionCHROMAT_FILE: MSMg01no136_i06.b1 PHD_FILE: MSMg01no136_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:55 2005CHROMAT_FILE: MSMg01no136_i06.g1 PHD_FILE: MSMg01no136_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTCCTTATCTATATTTGCGGCGCTATACGACTCCTATATGCAGAG
AACCGCGGAATTCTCTGCCATCCCCATGGTGTGATGGTTTGAATATACTT
GACCCATGGAAAGTGACACTATTAGGAGGTGTGGATAGATGTATGTATGT
GTATACACATATATACATATATGCATGCTCAAGTCTGCCCAGTGGAATCA
GAGCCTCCTCCTGACTGCCTGCAGAAGACAATCCCTGTCCCCATCCCACT
CCCTAAACTGTGCTGTCAGAGAGAGGACAATATGCCAGCTATCCTCACAT
AATAAGAGCCCGATTACCTCCGTTTCCCCAGCACTAGGTGGACCTGGCTG
TGGCTGTCCCATATTTCTCTGAAAAGAGGAATCAGGAGCTAGACTCATCA
GGGTGCATCTATGATAACACGGCCCCGAAGAAGTAGCCAAAGTCACTTGG
AATATGTATGTGACTTGGGTAGGGAGCACCTTTATTGGAAGTATGACACC
AACACTCCCTCCCAGCATGGAGTACAGAAAATAGAGTGTAGTGAGGAAAT
TAGGCCTCCCTGTTGCCTCTATGAGTTTATCTGTGAGCTTGCCATGTGGA
CTGTTACCATGGCAGATCGAATGCCTCCATCTAGCGCAATTTCTCACTTA
CTTAAGGCTGCACTATTTACTGAATTCTCTC
TTTTTTNNNACCAATGCTGTGTGAGGCCTGGCGGCCGCCTGTTCGCAACA
ACATTGTAGGTGGACNACTTAATCAGAAGGACTCCGCCGGAATTCCATAG
TTTTCTTCCTCTCTCCTACCTTTAGGAAATGTTTTACTTCTTATTGGGNA
AACTTGGACCTTTTTTAAATTTTTACAGAAAGCCTCATTGTTTTAAAAAA
ATTGGCCCCTTGGGGGGGCCCCTCATAAAAAAAAAAAATGGGAACTTTTG
GTCTTTTTCATGACATAATTTGGAAAATTTGAAACTCGTTACCCGTTTTG
GGGTGGGGAGTAAATTTGGGGGGGTTCTCAAAGGGTGCCCNTTCCTTCCA
AGAAGATTCTGGTTGAGCATATTTTCCCCTAAAAACGCAGAACGCGGGAA
CAATTTTGTTTTTATTCAACAAATGAGGTTCACCCATTACCAGTGAGGTT
GCGTTCTTTTTTGGGAGGGGAAACTCCTCCCTCTCTCATTTTCCCCGGCG
CGGCGTTTTTTTTTATCAAAAATAAATCTATTTTTTTATTTTCCACCCTC
AAATTTATTTTTTCACCCCCCCCACAATTTTTTCCATCCTTTACTTTTTT
CTTTTTTCTTACTTTTCCCACTATACATCATGTCACATTAACATTATTTC
CCTTCATCCCTTTCCCATATAAAATATACTTTAACTCTTATACGACTCAT
TTCCACTATATCACCTTTTCCCTATTCATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_i06.b1 MSMg01no136_i06.b1 CHROMAT_FILE:
MSMg01no136_i06.b1 PHD_FILE: MSMg01no136_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:55 2005
         (331 letters)



>mm_chr15_87859789_87860519
          Length = 731

 Score =  474 bits (245), Expect = e-138
 Identities = 300/325 (92%), Gaps = 15/325 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctctgccatc-cccatggtgtgatggtttgaatatacttgacccatggaaagtga 62
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattctctgccagcagccatggtgtgatggtttgaatatacttgacccatggaaagtga 276

                                                                       
Query: 63  cactattaggaggtgtggatagatgtatgtatgtgtatacacatatatacatatatgcat 122
           |||||||||||||||||||||    ||  ||    |||||    ||| ||||||||||||
Sbjct: 277 cactattaggaggtgtggata----ta--ta----tatac----atacacatatatgcat 322

                                                                       
Query: 123 gctcaagtctgcccagtggaatcagagcctcctcctgactgcctgcagaagacaatccct 182
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 323 gctcaagtctgcccagtggaatcagagcctcttcctgactgcctgcagaagacaatccct 382

                                                                       
Query: 183 gtccccatcccactccctaaactgtgctgtcagagagaggacaatatgccagctatcctc 242
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtccccatcccactctctaaactgtgctgtcagagagaggacaatatgccagctatcctc 442

                                                                       
Query: 243 acataataagagcccgattacctccgtttccccagcactaggtggacctggctgtggctg 302
           |||||| ||||||| ||||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct: 443 acataagaagagcctgattacctcagtttccccagcattaggtggtcctggctgtggctg 502

                                    
Query: 303 tcccatatttctctgaaaagaggaa 327
           |||||||||||||||||||||||||
Sbjct: 503 tcccatatttctctgaaaagaggaa 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)