MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-136I08
Chromosome	15 (Build37)
Map Location	9,596,650 - 9,597,170
singlet/doublet	singlet
Overlap gene	C230086A09Rik
Upstream gene	Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r
Downstream gene	Prlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
Link	Open Mouse BAC browser

Click to get alignment info.

name	Slc1a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20512 MGI:99917
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG622770 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622770 MGI:3644431
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC268781 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:268781
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins pseudo : _no_value

name	LOC382969 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:382969
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 15 ESTs, 6 Proteins pseudo : _no_value

name	LOC100039619 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039619
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 ESTs, 1 Protein

name	Ranbp3l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223332 MGI:2444654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1110020G09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68646 MGI:1915896
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Skp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27401 MGI:1351663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Lmbrd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320506 MGI:2444173
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666503 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666503
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Ugt3a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:105887 MGI:2146055
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039661 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039661
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 ESTs, 2 Proteins pseudo : _no_value

name	Ugt3a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223337 MGI:2145969
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC383094 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383094
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins pseudo : _no_value

name	Capsl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75568 MGI:1922818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il7r (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16197 MGI:96562
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C230086A09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320277 MGI:2443727
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prlr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19116 MGI:97763
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Agxt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268782 MGI:2146052
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930461P20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78244 MGI:1925371
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 71 ESTs, 6 Proteins

name	Bxdc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67832 MGI:1915082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rad1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19355 MGI:1316678
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930401A09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75777 MGI:1923027
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 2 Proteins

name	EG666579 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666579 MGI:3648322
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 19 ESTs, 4 Proteins pseudo : _no_value

name	Rai14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75646 MGI:1922896
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc1a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254195 GeneID:20512 MGI:99917
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 1 (glial high affinity glutamate transporter), member 3 transcript_id : NM_148938.2

name	EG622770 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149266393 GeneID:622770 MGI:3644431
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : predicted gene, EG622770 transcript_id : XM_897306.3

name	LOC100039619 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149266397 GeneID:100039619
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 ESTs, 1 Protein product : similar to RAN binding protein 3-like transcript_id : XM_001473207.1

name	Ranbp3l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37574123 GeneID:223332 MGI:2444654
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAN binding protein 3-like transcript_id : NM_198024.1

name	1110020G09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144226207 GeneID:68646 MGI:1915896
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110020G09 gene transcript_id : NM_001040395.2

name	Skp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70909358 GeneID:27401 MGI:1351663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : S-phase kinase-associated protein 2 (p45) transcript_id : NM_013787.2

name	Skp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70909362 GeneID:27401 MGI:1351663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : S-phase kinase-associated protein 2 (p45) transcript_id : NM_145468.1

name	Lmbrd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31581567 GeneID:320506 MGI:2444173
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LMBR1 domain containing 2 transcript_id : NM_177178.3

name	Ugt3a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46402180 GeneID:105887 MGI:2146055
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP glycosyltransferases 3 family, polypeptide A1 transcript_id : NM_207216.1

name	Ugt3a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365155 GeneID:223337 MGI:2145969
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP glycosyltransferases 3 family, polypeptide A2 transcript_id : NM_144845.3

name	Capsl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21312981 GeneID:75568 MGI:1922818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcyphosine-like transcript_id : NM_029341.1

name	Il7r (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45269151 GeneID:16197 MGI:96562
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 7 receptor transcript_id : NM_008372.3

name	C230086A09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125991757 GeneID:320277 MGI:2443727
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C230086A09 gene transcript_id : NM_177123.3

name	Prlr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142379167 GeneID:19116 MGI:97763
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : prolactin receptor transcript_id : NM_011169.4

name	Agxt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:73661177 GeneID:268782 MGI:2146052
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : alanine-glyoxylate aminotransferase 2 transcript_id : NM_001031851.1

name	4930461P20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149266407 GeneID:78244 MGI:1925371
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 71 ESTs, 5 Proteins product : RIKEN cDNA 4930461P20 gene transcript_id : XM_001473643.1

name	Bxdc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802629 GeneID:67832 MGI:1915082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : brix domain containing 2 transcript_id : NM_026396.3

name	Rad1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84872188 GeneID:19355 MGI:1316678
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAD1 homolog (S. pombe) transcript_id : NM_011232.2

name	4930401A09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149266409 GeneID:75777 MGI:1923027
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 2 Proteins product : RIKEN cDNA 4930401A09 gene, transcript variant 2 transcript_id : XM_897217.3

name	Rai14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981406 GeneID:75646 MGI:1922896
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinoic acid induced 14 transcript_id : NM_030690.2

name	Slc1a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24233554 CCDS:CCDS27373.1 GeneID:20512 MGI:99917
definition	GO_component : GO:0042995 - cell projection [Evidence IDA]; GO:0043025 - cell soma [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0017153 - sodium:dicarboxylate symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : glial high affinity glutamate transporter; solute carrier family 1, member 3; glutamate/aspartate transporter product : solute carrier family 1 (glial high affinity glutamate transporter), member 3 protein_id : NP_683740.1

name	EG622770 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149266394 GeneID:622770 MGI:3644431
definition	codon_start : 1 product : hypothetical protein protein_id : XP_902399.3

name	LOC100039619 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149266398 GeneID:100039619
definition	codon_start : 1 product : similar to RAN binding protein 3-like protein_id : XP_001473257.1

name	Ranbp3l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37574124 GeneID:223332 MGI:2444654
definition	GO_process : GO:0046907 - intracellular transport [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : RAN binding protein 3-like protein_id : NP_932141.1

name	1110020G09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94536713 GeneID:68646 MGI:1915896
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003951 - NAD+ kinase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : hypothetical protein LOC68646 protein_id : NP_001035485.1

name	Skp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7949135 GeneID:27401 MGI:1351663
definition	GO_component : GO:0000151 - ubiquitin ligase complex [Evidence TAS] GO_function : GO:0016301 - kinase activity [Evidence IEA] GO_process : GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IDA]; GO:0008634 - negative regulation of survival gene product activity [Evidence IDA]; GO:0000074 - regulation of progression through cell cycle [Evidence IPI]; GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IDA] codon_start : 1 note : isoform a is encoded by transcript variant 1; p45 product : S-phase kinase-associated protein 2 isoform a protein_id : NP_038815.1

name	Skp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70909363 GeneID:27401 MGI:1351663
definition	GO_component : GO:0000151 - ubiquitin ligase complex [Evidence TAS] GO_function : GO:0016301 - kinase activity [Evidence IEA] GO_process : GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IDA]; GO:0008634 - negative regulation of survival gene product activity [Evidence IDA]; GO:0000074 - regulation of progression through cell cycle [Evidence IPI]; GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IDA] codon_start : 1 note : isoform b is encoded by transcript variant 2; p45 product : S-phase kinase-associated protein 2 isoform b protein_id : NP_663443.1

name	Lmbrd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559855 GeneID:320506 MGI:2444173
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : LMBR1 domain containing 2 protein_id : NP_796152.2

name	Ugt3a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402181 CCDS:CCDS27374.1 GeneID:105887 MGI:2146055
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation note : UDP glucuronosyltransferase 3 family, polypeptide A1 product : UDP glycosyltransferases 3 family, polypeptide A1 protein_id : NP_997099.1

name	Ugt3a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450243 CCDS:CCDS27375.1 GeneID:223337 MGI:2145969
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : UDP glucuronosyltransferase 3 family, polypeptide A2 product : UDP glycosyltransferases 3 family, polypeptide A2 protein_id : NP_659094.1

name	Capsl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110835711 GeneID:75568 MGI:1922818
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 note : Calcyphosine product : calcyphosine-like protein_id : NP_083617.2

name	Il7r (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45269152 CCDS:CCDS27376.1 GeneID:16197 MGI:96562
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004896 - hematopoietin/interferon-class (D200-domain) cytokine receptor activity [Evidence IEA]; GO:0004907 - interleukin receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA]; GO:0048535 - lymph node development [Evidence IMP] codon_start : 1 note : IL-7 receptor alpha chain product : interleukin 7 receptor precursor protein_id : NP_032398.3

name	C230086A09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125991758 GeneID:320277 MGI:2443727
definition	GO_function : GO:0008289 - lipid binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : KPL2 protein protein_id : NP_796097.2

name	Prlr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328491 CCDS:CCDS27377.1 GeneID:19116 MGI:97763
definition	GO_component : GO:0009986 - cell surface [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004896 - hematopoietin/interferon-class (D200-domain) cytokine receptor activity [Evidence IEA]; GO:0042978 - ornithine decarboxylase activator activity [Evidence ISS]; GO:0004925 - prolactin receptor activity [Evidence ISS] [Evidence IMP]; GO:0042803 - protein homodimerization activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence ISS]; GO:0007166 - cell surface receptor linked signal transduction [Evidence ISS]; GO:0007595 - lactation [Evidence IMP] [Evidence ISS]; GO:0030155 - regulation of cell adhesion [Evidence IMP]; GO:0030856 - regulation of epithelial cell differentiation [Evidence IMP]; GO:0006694 - steroid biosynthesis [Evidence ISS]; GO:0042110 - T cell activation [Evidence ISS]; GO:0007171 - transmembrane receptor protein tyrosine kinase activation (dimerization) [Evidence ISS]; GO:0042977 - tyrosine phosphorylation of JAK2 protein [Evidence ISS] codon_start : 1 exception : mismatches in translation note : prolactin receptor related sequence 1 product : prolactin receptor protein_id : NP_035299.3

name	Agxt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:73661178 CCDS:CCDS27378.1 GeneID:268782 MGI:2146052
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0008453 - alanine-glyoxylate transaminase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : alanine-glyoxylate aminotransferase 2 protein_id : NP_001027021.1

name	4930461P20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149266408 GeneID:78244 MGI:1925371
definition	codon_start : 1 product : hypothetical protein LOC78244 protein_id : XP_001473693.1

name	Bxdc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:141802630 GeneID:67832 MGI:1915082
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0007046 - ribosome biogenesis [Evidence IEA] codon_start : 1 product : BRIX protein_id : NP_080672.3

name	Rad1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84872189 CCDS:CCDS27379.1 GeneID:19355 MGI:1316678
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0008408 - 3'-5' exonuclease activity [Evidence ISS]; GO:0003684 - damaged DNA binding [Evidence IEA] [Evidence ISS]; GO:0008853 - exodeoxyribonuclease III activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA] GO_process : GO:0000075 - cell cycle checkpoint [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : RAD1 homolog protein_id : NP_035362.2

name	4930401A09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149266410 GeneID:75777 MGI:1923027
definition	codon_start : 1 product : hypothetical protein LOC75777 isoform 2 protein_id : XP_902310.3

name	Rai14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13507620 GeneID:75646 MGI:1922896
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : NORPEG-like protein product : ankycorbin protein_id : NP_109615.1

name	LOC666503 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666503
definition	number : 5 pseudo : _no_value

name	LOC666503 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666503
definition	number : 4 pseudo : _no_value

name	LOC666503 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666503
definition	number : 3 pseudo : _no_value

name	LOC666503 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666503
definition	number : 2 pseudo : _no_value

name	LOC666503 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666503
definition	number : 1 pseudo : _no_value

name	LOC383094 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383094
definition	number : 1 pseudo : _no_value

name	LOC383094 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383094
definition	number : 2 pseudo : _no_value

name	LOC383094 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383094
definition	number : 3 pseudo : _no_value

name	LOC383094 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383094
definition	number : 4 pseudo : _no_value

name	LOC383094 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383094
definition	number : 5 pseudo : _no_value

name	LOC383094 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383094
definition	number : 6 pseudo : _no_value

name	LOC268781 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149266401 GeneID:268781
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : similar to Myotubularin related protein 3 pseudo : _no_value transcript_id : XR_031101.1

name	LOC382969 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149266396 GeneID:382969
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 15 ESTs, 6 Proteins product : similar to uracil DNA glycosylase pseudo : _no_value transcript_id : XR_031075.1

name	LOC100039661 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149266403 GeneID:100039661
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 33 ESTs, 2 Proteins product : similar to UDP glycosyltransferases 3 family, polypeptide A1 pseudo : _no_value transcript_id : XR_031131.1

name	EG666579 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149266411 GeneID:666579 MGI:3648322
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 19 ESTs, 4 Proteins product : predicted gene, EG666579 pseudo : _no_value transcript_id : XR_001896.2

clone name	MSMg01-474J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-192O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264F20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-370B05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-335P19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-476E24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-269E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503F16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-212G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148E14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-370A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088I20
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-136I08.T7 (MSMg01no136_i08.b1)	MSMg01-136I08.TJ (MSMg01no136_i08.g1)
ACC	AG342698	AG342699
length	683	864
length of high quality (start - end)	525 (58 - 582)	---
definition	CHROMAT_FILE: MSMg01no136_i08.b1 PHD_FILE: MSMg01no136_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:56 2005	CHROMAT_FILE: MSMg01no136_i08.g1 PHD_FILE: MSMg01no136_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:56 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	ATTTTTTAACTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXCGCGGAATTCCATGGCCAGCCTACTTCTTCATTATGAACTGTC AATCTACTAGATATCATGTTTAATGTCTTTTTACACAAACACTTAAATGA GTACCACATAGTCATATAATGTCTTTATTTCGCAGAATTGTTGGCTTCTT GGACAACTGGCCACTGTTGGAAGAGTGGTTTACACAGCCAAAAAACATTC TGACGAAAGTCAATGCTGAAATAGATGAAGCGCTCTTATGCCAAAAAGTA AAAGAAATTTTTGCTACTGAAACAGTAAACAAAAAGATCAAAGGTAATCC TATGCACATATGTTTGCGAACATATTAAATGGTTAAGAGTAACCATTGTA TCTTGATCATATTCTTCCTCTCCCAACTCCCCACAGATCCACCCCACCCC CGCATTTCATACCAACCCAACTTTTTGTCATCAAGTATTTTTCTTTTTTC CTTTCTTTCTTCTCTTTCTTTCTCCCCTTTCTTTCCTTCTCTCTTTCCTT CCTTCCCTTTCCCTTCTTTCTTTCCTTCTCTTTCCTTCCTTCTTTCCTTC CTTCCTTTCTTCCCTTTCCCTCCCTTCCTTCCTTCTTTCCTTCCATCCTT CTGCTTGCTTTCCTTCTTCCTTTCTTTCTTTCT	NTTTTNCCCCTTTCCNCNCCCCCCTTCCCTCTCCTCCACTTTTTCTTTTC ACTTTCTCCTCCCCCCTTCCCCCTACTTATTTACGCGATTAGGTTCTTTT ATTTTACTTTTTTATTATTTCATTTCAATATACAAACCAAAAAAAACAAA AAATACCCACACCAAAATACAACAACTTTATATAAATCATAATTATATCA CACTTCTTATTTTTTTCCCGGGCGGAAAAAAGGGGTCCAACTAAAGATTG GGGGGGGGCTTAGGGGGACCCCTGTGGGGGAGGGAGGTACTCCGGTCCCC CCATGGGGGGTTTTTCTCTCCGCCCCCCCCCCGGAAAAAAAAAAAAAAAT TGTTTTTTTAAAAGGGGGCCNNATGGGGGGGGGAAAAACCCCAGAGCCCT TTTAAATTTTTAAGGGGAAAAAAAAAAGAGGGGGGTTAAATACCCCCCCC CCGCGGTTTCCGCGGGGTGGGGNTCAAAAAAAATTTTTCCCAAAAAATTC CCCCCCTTTGGGGAAAAGTTGGGGAAAAAAACCAAGGGTAAAGGGTTCTC ACAAAAAAAAACCGTTTTGGTTTNTGTTTCACAGATTTCGCGGGGAGAAA GGNGGGTGGCTCCCTCACTCCCAGAGGAGAGAAAAAATTAGGTGGGCAAG AGCAAAGNAGGGTNGGTAAAAGTCAAGAGGGNTGTTAAGAAAAAAAAAGG AGAGGAGGGTTCTCTTTTTNNTTCNTTTNCNNNNNNAAAGGGCCCCCCCC GGAGAAAAGAGATTTTTCCTTTTTGGTTGGGAAAACAATAGGTGGGGGGT AANTAGAANAAAAAGATTTATTNAAAGTAGAGCTGGGGGTGCCTGTTAAT AAAAATAAACAAAG
quality values	Open. Hide. 14 16 18 20 19 16 10 9 10 10 9 9 9 9 14 13 13 11 11 11 9 22 17 20 16 14 12 12 19 39 28 22 22 24 27 29 39 25 21 10 10 10 21 19 10 11 9 13 10 10 10 15 16 20 21 17 20 24 28 32 31 28 28 30 32 36 36 26 26 26 22 19 9 9 12 12 11 18 25 37 40 41 42 50 30 31 28 30 30 35 47 50 53 50 50 50 50 50 50 50 50 50 50 57 57 57 54 54 48 48 48 50 50 50 51 50 50 50 57 57 68 68 68 68 68 68 53 57 57 57 57 48 48 37 35 35 41 41 41 48 57 57 68 68 68 50 50 50 50 50 50 68 57 57 57 57 57 57 57 57 48 54 54 57 57 57 57 57 57 57 57 57 57 57 51 68 68 51 51 50 57 57 57 54 50 50 46 46 46 46 50 50 50 57 57 57 57 68 44 44 32 32 32 44 44 57 57 57 57 57 57 57 57 57 57 54 52 52 52 52 52 57 57 57 57 57 45 45 52 52 57 57 59 57 57 57 52 52 57 57 57 57 57 57 57 57 57 57 57 57 62 62 62 62 62 52 52 52 52 57 52 52 57 57 57 57 59 59 57 57 57 57 52 47 47 57 57 57 52 52 52 57 57 68 68 68 68 57 57 57 57 57 57 52 52 57 57 52 52 52 52 52 52 52 52 54 57 57 57 57 57 57 52 52 52 52 57 50 59 54 54 54 57 57 57 43 43 33 28 27 23 27 29 33 35 37 35 44 43 33 27 27 36 44 47 57 57 57 57 57 59 59 57 46 43 59 43 47 47 57 57 68 59 57 57 47 43 57 57 57 54 54 57 57 42 42 35 37 37 36 30 25 37 37 44 43 43 43 46 43 43 46 46 48 46 46 46 46 48 48 48 57 48 48 48 43 43 43 48 57 57 59 59 59 59 59 59 59 59 59 48 39 37 37 26 25 12 15 14 20 24 11 11 11 24 24 39 37 46 59 59 59 59 59 59 41 41 41 44 41 39 35 35 35 41 41 20 20 18 34 23 30 30 33 43 43 37 30 30 30 42 42 59 59 59 57 48 48 48 47 47 43 37 37 43 43 47 57 59 57 57 57 57 57 48 48 48 48 48 48 54 57 57 57 48 48 48 48 48 48 48 48 43 48 48 48 48 48 48 48 59 48 48 48 48 59 57 57 48 48 48 59 46 43 43 41 41 39 39 39 37 32 18 17 15 15 19 19 37 37 37 27 30 17 17 18 30 30 48 42 42 42 42 47 47 47 57 27 30 14 14 14 15 15 20 31 32 33 37 19 12 11 15 16 20 22 17 10 10 10 17 19 22 24 24 25 26 28 24 20 20 21 32 35 30 24 19 15 14 15 15 9 9 10 13 16 11 8 8 8 15 16 37 40 41 40 34 34 28 24 22 25 24 37 36 20 24 24 24 23 12 10 10 10 10 26 26 26 31 23 25 24 23 14 21 21 20 16 12 13 10 10 10 10 17 19 26 22 13 13 13 13 19 22 20 20 20 17 14 16 16 14 12	Open. Hide. 0 3 7 7 3 0 3 7 7 9 9 9 7 7 3 0 3 0 3 14 7 8 15 10 12 11 17 19 8 8 8 13 10 8 8 8 6 6 8 8 13 13 13 10 10 10 10 10 8 11 8 8 8 8 6 6 6 6 10 8 8 8 10 8 8 13 10 11 10 10 10 10 8 8 6 7 10 8 9 9 8 8 8 8 8 8 9 6 8 6 6 8 6 6 8 8 8 10 19 9 9 9 11 11 8 8 6 6 10 10 8 8 8 8 6 6 9 10 8 8 8 8 10 13 8 8 8 8 12 8 10 11 10 10 8 10 8 8 8 17 10 9 9 9 9 9 11 12 15 13 13 19 11 11 11 17 10 8 6 6 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 9 12 10 8 8 8 8 8 8 8 8 11 9 9 11 11 11 11 12 9 8 8 8 8 8 10 14 13 13 10 10 12 19 17 13 10 10 6 6 6 6 6 6 6 6 12 13 8 9 8 8 8 8 7 7 7 6 8 8 6 6 6 10 6 6 7 8 9 9 8 10 10 11 12 8 8 8 8 8 6 7 8 8 8 8 8 8 8 10 15 10 8 8 8 8 11 12 12 9 9 9 10 10 10 8 8 9 8 8 6 7 8 8 9 9 11 11 12 8 8 6 6 6 6 10 14 11 8 8 8 9 7 7 6 6 6 6 6 6 6 9 14 15 15 18 9 9 9 9 9 11 11 12 10 10 8 8 9 10 13 13 22 22 18 12 10 8 8 8 8 9 10 11 16 25 23 18 18 11 11 11 10 10 14 15 8 6 6 3 0 0 3 6 8 8 8 13 15 19 18 16 17 9 9 8 8 7 7 7 8 6 6 6 6 6 7 8 8 13 9 10 11 11 13 11 12 14 10 9 10 8 8 8 8 9 11 12 14 9 11 11 11 9 10 8 8 8 8 11 16 18 8 7 6 6 6 6 8 8 8 8 8 8 16 16 22 11 10 11 8 8 8 14 14 12 15 15 12 10 10 9 10 10 15 12 9 9 10 10 10 3 0 3 7 8 17 19 32 18 17 12 12 12 21 21 18 17 12 10 11 11 19 25 25 18 10 12 9 9 14 19 28 23 17 11 11 9 10 10 9 8 10 8 9 8 6 6 9 9 10 19 20 17 9 9 9 9 8 8 6 8 6 6 8 6 12 11 12 11 9 8 8 6 6 8 8 6 6 6 6 6 8 13 21 9 9 9 9 9 7 9 9 11 11 12 11 9 10 10 10 12 3 0 3 9 9 10 8 6 6 6 6 6 8 8 8 8 8 8 8 9 11 11 11 12 10 11 10 10 8 3 0 3 12 9 9 7 7 7 7 7 8 9 10 8 8 8 8 6 8 6 6 6 8 6 6 6 7 7 9 9 9 9 8 8 9 9 9 10 11 9 9 7 7 6 6 6 6 6 6 6 6 6 8 8 3 0 3 9 8 6 3 0 3 8 9 9 9 9 9 6 8 6 6 6 6 8 8 8 3 0 3 6 6 6 6 8 8 8 7 8 8 8 10 6 6 6 6 6 8 8 6 6 6 6 7 8 11 9 8 8 6 6 6 7 17 12 3 0 0 3 14 3 0 3 14 3 0 3 0 0 0 0 0 0 3 7 6 6 6 6 9 21 15 12 12 10 10 8 11 9 10 10 10 11 10 12 6 6 6 6 6 9 10 11 6 6 6 6 8 10 10 9 9 6 6 6 6 6 6 8 7 7 9 9 9 9 9 6 6 8 8 6 7 8 7 7 6 6 8 3 0 3 8 8 7 3 0 3 13 17 11 8 8 8 8 6 7 7 6 3 0 3 9 7 8 8 8 8 8 6 6 6 6 7 9 9 8 8 6 8 6 6 8 8 10 10 8 8 8 8 7 9 9 9 8 15 9 9 9 15 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no136_i08.b1 MSMg01no136_i08.b1 CHROMAT_FILE:
MSMg01no136_i08.b1 PHD_FILE: MSMg01no136_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:56 2005
         (525 letters)



>mm_chr15_9596539_9597463
          Length = 925

 Score =  977 bits (505), Expect = 0.0
 Identities = 517/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatggccagcctacttcttcattatgaactgtcaatctactagatatcatgttt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gaattccatggccaggctacttcttcattatgaactgtcaatctactagatatcatgttt 573

                                                                       
Query: 65  aatgtctttttacacaaacacttaaatgagtaccacatagtcatataatgtctttatttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aatgtctttttacacaaacacttaaatgagtaccacatagtcatataatgtctttatttc 513

                                                                       
Query: 125 gcagaattgttggcttcttggacaactggccactgttggaagagtggtttacacagccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gcagaattgttggcttcttggacaactggccactgttggaagagtggtttacacagccaa 453

                                                                       
Query: 185 aaaacattctgacgaaagtcaatgctgaaatagatgaagcgctcttatgccaaaaagtaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aaaacattctgacgaaagtcaatgctgaaatagatgaagcgctcttatgccaaaaagtaa 393

                                                                       
Query: 245 aagaaatttttgctactgaaacagtaaacaaaaagatcaaaggtaatcctatgcacatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aagaaatttttgctactgaaacagtaaacaaaaagatcaaaggtaatcctatgcacatat 333

                                                                       
Query: 305 gtttgcgaacatattaaatggttaagagtaaccattgtatcttgatcatattcttcctct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtttgcgaacatattaaatggttaagagtaaccattgtatcttgatcatattcttcctct 273

                                                                       
Query: 365 cccaactccccacagatccaccccacccccgcatttcataccaacccaactttttgtcat 424
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cccaacttctcacagatccaccccacccccgcatttcataccaacccaactttttgtcat 213

                                                                       
Query: 425 caagtatttttcttttttcctttctttcttctctttctttctcccctttctttccttctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 caagtatttttcttttttcctttctttcttctctttctttctcccctttctttccttctc 153

                                                    
Query: 485 tctttccttccttccctttcccttctttctttccttctctt 525
           | |||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tttttccttccttccctttcccttctttctttccttctctt 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information