Query= MSMg01no138_d17.b1 MSMg01no138_d17.b1 CHROMAT_FILE:
MSMg01no138_d17.b1 PHD_FILE: MSMg01no138_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:12 2005
(510 letters)
>mm_chr15_8342593_8343502
Length = 910
Score = 845 bits (437), Expect = 0.0
Identities = 486/527 (92%), Gaps = 39/527 (7%)
Strand = Plus / Minus
Query: 6 gaattcattttcatttccgtgttaatacttggatccttgtaggagaatataatgtgcttt 65
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaattcattttcatttgagtgttaatacttggatccttgtaggagaatataatgtgcttt 468
Query: 66 ttgtgtaccatttttatttttatttttttcagatgtacctttgccccgaattttctatca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ttgtgtaccatttttatttttatttttttcagatgtacctttgccccgaattttctatca 408
Query: 126 tatgtattctataatgaagttagatatgatgtttattatgtatttgtttgtatgtgttat 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tatgtattctataatgaagttagatatgatgtttattatgtatttgtttgtatgtgttat 348
Query: 186 ggcttcagttgcccaagccagctctttaaagttctgagatgctcattctccatatccagg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggcttcagttgcccaagccagctctttaaagttctgagatgctcattctccatatccagg 288
Query: 246 tggccaccacatttggtttttatatgtcccgctcttccttggta---------------- 289
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tggccaccacatttggtttttatatgtcccgctcttccttggtatcatcctggcctgtct 228
Query: 290 -----------------tcatcctggcctgtctttacaggtctcattgcttcatcaatat 332
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ttacaggtctcattgcttcatcctggcctgtctttacaggtctcattgcttcatcaatat 168
Query: 333 atttcctacgtactcttcctgcctacaatttgttgctttccacgtcttctataatgtgac 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 atttcctacgtactcttcctgcctacaatttgttgctttccacgtcttctataatgtgac 108
Query: 393 caaagagtaggtactaactccaggtctgttca------tattattattattattattatt 446
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 107 caaagagtaggtactaactccaggtctgttcatattattattattattattattattatt 48
Query: 447 attattaaatcctgtagttttcacttacatttggactacattaatgt 493
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 attattaaatcctgtagttttcacttacatttggactacattaatgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_d17.g1 MSMg01no138_d17.g1 CHROMAT_FILE:
MSMg01no138_d17.g1 PHD_FILE: MSMg01no138_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:12 2005
(605 letters)
>mm_chr15_8181760_8182764
Length = 1005
Score = 1118 bits (578), Expect = 0.0
Identities = 596/602 (99%)
Strand = Plus / Plus
Query: 1 agtctttatagctattagatatatttttcaaaaataataaatgcctttgagttattaata 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctttataggtattagatatatttttcaaaaataataaatgcctttgagttattaata 260
Query: 61 gattaattattttgtgctccatttaggaacaactaggacatcatgattctcagcatttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattaattattttgtgctccatttaggaacaactaggacatcatgattctcagcatttgg 320
Query: 121 ataaatttgacattccttttggtatgtatacaaatgactaatgtagtgtctaagtttagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaatttgacattccttttggtatgtatacaaatgactaatgtagtgtctaagtttagt 380
Query: 181 gttaagttggctgtttagaagtaaaggtaataaggccgggcatggtggtacatagctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaagttggctgtttagaagtaaaggtaataaggccgggcatggtggtacatagctttg 440
Query: 241 atcccagcgcttggaaggcataggaaggtggatctcaggtttttcaggagtttcaagtct 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 atcccagcgcttggaaggcataggcaggtggatctcaggtttttcaggagtttcaagtct 500
Query: 301 acaattcaagatcctggtcagtcagggctacacagagaaaccctgtctcaggaatttttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaattcaagatcctggtcagtcagggctacacagagaaaccctgtctcaggaatttttt 560
Query: 361 ttaaaaagaaagaaattaatataaaaatagtatattaatgttttcatgttctattgctgt 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaaaagaaagaaattaatataaaaatagtatattaatgttttcatgttctattgctgt 620
Query: 421 gaagagataccatgaccacacaagtcttttgtttaatttttgtttttcaagatagggttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagagataccatgaccacacaagtcttttgtttaatttttgtttttcaagatagggttt 680
Query: 481 ctctgggtatccctgcctgtcctgggactcacttcatagaccaggctaacatcaaactca 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctgtgtatccctgcctgtcctgggactcacttcatagaccaggctaacatcaaactca 740
Query: 541 gagagccttctgcctctgtccctgcctcctgagtgttggggtcaaaggtaagcaccacca 600
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 gagagctttctgcctctgtccctgcctcctgagtgttggggtcaaaggtgagcaccacca 800
Query: 601 ct 602
||
Sbjct: 801 ct 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
