Query= MSMg01no140_o19.b1 MSMg01no140_o19.b1 CHROMAT_FILE:
MSMg01no140_o19.b1 PHD_FILE: MSMg01no140_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:49 2005
(337 letters)
>mm_chr15_98342915_98343651
Length = 737
Score = 601 bits (311), Expect = e-176
Identities = 323/327 (98%)
Strand = Plus / Minus
Query: 4 gaattccaggaacctgaccagagcagctgggccccgtgccctgtacttcttgccaagcct 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaattccaggaacctgaacagagcagctgggccccgtgccctgtacttcttgccaagcct 471
Query: 64 gccaacggaatgcggagggggacttttgctgtgcgtgacagtgaccacaccatctgtctc 123
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gccgacggaatgcggagggtgacttttgctgtgcgtgacagtgaccacaccatctgtctc 411
Query: 124 tagccgtgtctctcctgaactattcacatttcacaaacgtgactaagtcacttgtgcgtc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tagccgtgtctctcctgaactattcacatttcacaaacgtgactaagtcacttgtgcgtc 351
Query: 184 atcctttttgcacattgccctcccggctttaaacagtaacaacagcagaattgcagagag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atcctttttgcacattgccctcccggctttaaacagtaacaacagcagaattgcagagag 291
Query: 244 cggagacttacctgagtacttggtccttatggctgaacgcctcccattagtccctcagga 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 290 cggagacttacctgagtacttggtccttatggctgaatgcctcccattagtccctcagga 231
Query: 304 atggtctctcgagggtggtgggggtgg 330
|||||||||||||||||||||||||||
Sbjct: 230 atggtctctcgagggtggtgggggtgg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_o19.g1 MSMg01no140_o19.g1 CHROMAT_FILE:
MSMg01no140_o19.g1 PHD_FILE: MSMg01no140_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:49 2005
(598 letters)
>mm_chr15_98210403_98211402
Length = 1000
Score = 1017 bits (526), Expect = 0.0
Identities = 581/604 (96%), Gaps = 10/604 (1%)
Strand = Plus / Plus
Query: 1 tttatgaatctctaagtctcctgcgggtgtcctcatctaccacaccccttgtacatgcat 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatgaatctctaagtctcctgcaggtgtcctcatctaccacaccccttgtacatgcat 260
Query: 61 ggtgttctcctactagcccccctcgacttgcagacagcatctcaaccgttgtgttgtgaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ggtgttctcctactagcccccctcgacttgcagacagcatctcaaccgttgtattgtgaa 320
Query: 121 aatgggagctaactactccagaaggtcatgggggg---tggcatttactgatttgagtgt 177
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 321 aatgggagctaactactccagaaagtcatgggggggggtggcatttactgatttgagtct 380
Query: 178 agtgctaaaaacagcagaaatgctgaagagttacccagttttcttctcctcacctctaac 237
|||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 381 agtgctaaaaacagcagaaacgctgaagagttgcctagttttcttctcctcacctctaag 440
Query: 238 tcatattgcattgtctttaaaagaaga---ggaattatcctgaggagcgagccaaacttc 294
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tcatattgcattgtctttaaaagaagaagaggaattatcctgaggagcgagccaaacttc 500
Query: 295 ttacatatcagaaaagactttccataccagagaggagcctgctagcccagaaactaagtg 354
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacataacagaaaagactttccataccagagaggagcctgctagcccagaaactaagtg 560
Query: 355 cagacaagagggctaaggggcagggaaagtgaccgatcaggaaaaggctagagtggtgga 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagacaagagggctaaggggcagggaaagtgaccgatcaggaaaaggctagagtggtgga 620
Query: 415 ccctggggaaagcagcagagaaaaaaaaccacgggggcaggggcaggggcaggcattacc 474
|||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct: 621 ccctggggaaagcagcagagaaaa----ccacgggcgcaggggcgggggcaggcattacc 676
Query: 475 gtgctccatcttctccctgtgcagatgtggcccattttcctagggtgtttggcgtgtctc 534
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 677 gtgctccatcttctccctgtgcagacgtggcccattttcctagggtgtttggcgtgtctc 736
Query: 535 tgaatgcaggagaaattcaaaagatactgtacacccatctgatctcacaccatccgatct 594
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 737 tgaatgcaggagaaattcaaaagaaactgtacacccatctgatctcacaccatccgatct 796
Query: 595 cagg 598
||||
Sbjct: 797 cagg 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1000
Length adjustment: 10
Effective length of query: 588
Effective length of database: 990
Effective search space: 582120
Effective search space used: 582120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
