BAC Information

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BAC

Clone NameMSMg01-143O06
Chromosome15 (Build37)
Map Location 86,486,236 - 86,486,498
singlet/doubletsinglet
Overlap genenone
Upstream genePpara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
Downstream geneLOC100042309, AW049604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143O06.T7 (MSMg01no143_o06.b1)MSMg01-143O06.TJ (MSMg01no143_o06.g1)
ACCAG348115AG348116
length678729
length of high quality
(start - end)
302 (68 - 369)262 (75 - 336)
definitionCHROMAT_FILE: MSMg01no143_o06.b1 PHD_FILE: MSMg01no143_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:34 2005CHROMAT_FILE: MSMg01no143_o06.g1 PHD_FILE: MSMg01no143_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAAAATTTGCGGCGCTAAACGACTCCTATTTCCAGAGGACCGCGGAAT
TCCAGAATTCCCAGTTTAGTTCACGAGGCTGGATGTCTCAGCTGGCCTTC
ATATATGCCAGTACCCTGAAGAAGTAGGCTCTGATGCCAGTGAAGGAACA
GACTTGTAAGTGAGGAGAGGACAAACAGGCAAAGCAAGAGAGCGTTCTTC
TTCCATATCCTTTATAAAAGCTTCCAGCAGAAGGTGTAGCCAGGACTAAA
GGTGAATCTTCCCACCTCAAAAGCTCTGGATTAAAGGTCTTCCCACTTCA
CGTGATTTAAGAATAATCCCTCACAGGTGTACCCACCTACTTGACTTTCA
GTTGATTCTAGATGTAGACGAGTTGACAAATCAAGGATGGATCTGGCAGA
TATAACACACCCCCCCGCTCTTACGGAACACAGAGCTTATAAGTGGAGCT
GTGCACAGAAGGTAGCTGGTTATTTTTTATATAACAGGTTGCACGTGTAA
ATATCTTCTCATTGAATAGATTGATCCGTGAGACTGAGACTCTTTCTATA
TGCCCTCTCGATTATTAATAGTATGACCGTCTTTATACCTTCATTTTAAC
CAACACATGATCTTCTAGCCTCCCGCGCAAACCATCATTTTTTACTCATA
TATTCCCATAATATAAAATCTTATTCTT
CCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTTACTGAATACCAAAATCATGGG
TATTCACACATCCATTCATAGCCTTCTCCATGGAAAACGGGTCTCAGTTT
CTCCCCTTCAAGCAAATAGCCTGCATGTTTAGCAATTCTGGCTTTCCTAG
TACTATCTGTATGATTCCTGCCATCTACAATACATAGTTACAGGTATACA
CTCAGAGAAAGAAAAAAAACAATAAAATGGACAAGAATGGAGATCTAGAG
TGATAATGGAGCCTGTCTAGAGGTCAAACCTGCAGGGAAGAAAGCCGTAT
GGAGAGAGAGAGAGAGAGACAGAGAGATAGAGACATTTCTTTCCCTATTC
ACTTATACTTCTGTACCCCCCCCCCCCGGTGTTACATCTATCCTCCTTTC
CCTCCCACCTTCATCTATTCTCTTCCTATACCCACCACACATACATATAA
ACGCTTAAATATTTATCTATCTTACCACTTTCCCCACTTTTTTTATCCCC
ACCCCTCTCCTTTTTTTTTTCCTTCCCCCCTCTTTTCTTCACTTCGCAAC
CTTGACTATCGCTTACTACCTACTTATTTTACTATCTTATCCTATTCTCA
CATTTTCACCCCTTTCTCATTAATCCTTTCTCCTTCTTATTCTCATTATT
AATTATTACACACACTTTTTTTTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_o06.g1 MSMg01no143_o06.g1 CHROMAT_FILE:
MSMg01no143_o06.g1 PHD_FILE: MSMg01no143_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:34 2005
         (262 letters)



>mm_chr15_86485900_86486562
          Length = 663

 Score =  485 bits (251), Expect = e-142
 Identities = 260/263 (98%), Gaps = 1/263 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttactgaataccaaaatcatgggtattcacacatccattcatagccttctccatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 catttactgaataccaaaatcatgggtattcacacatccattcatagccttctccatgga 540

                                                                       
Query: 61  aaacgggtctcagtttctccccttcaagcaaatagcctgcatgtttagcaattctggctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aaacgggtctcagtttctccccttcaagcaaatagcctgcatgtttagcaattctggctt 480

                                                                       
Query: 121 tcctagtactatctgtatgattcctgccatctacaataca-tagttacaggtatacactc 179
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 479 tcctagtactatctgtatgattcctgccatctacaatacattagttacaggtatacactc 420

                                                                       
Query: 180 agagaaagaaaaaaaacaataaaatggacaagaatggagatctagagtgataatggagcc 239
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agagaaagaaaaaacacaataaaatggacaagaatggagatctagagtgataatggagcc 360

                                  
Query: 240 tgtctagaggtcaaacctgcagg 262
           |||| ||||||||||||||||||
Sbjct: 359 tgtcaagaggtcaaacctgcagg 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 663
Length adjustment: 9
Effective length of query: 253
Effective length of database: 654
Effective search space:   165462
Effective search space used:   165462
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)