Query= MSMg01no145_a06.b1 MSMg01no145_a06.b1 CHROMAT_FILE:
MSMg01no145_a06.b1 PHD_FILE: MSMg01no145_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:59 2005
(418 letters)
>mm_chr15_92987539_92988354
Length = 816
Score = 658 bits (340), Expect = 0.0
Identities = 403/436 (92%), Gaps = 23/436 (5%)
Strand = Plus / Minus
Query: 4 ggaattctgtctgta-tccagtctggccttgaactcagaaatccacctacctctgcctcc 62
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ggaattctgtctgtagaccagtctggccttgaactcagaaatccacctacctctgcctcc 536
Query: 63 tgagcgctggattaaaggcctgcggcaccattgcctggcctatgatttggtttt------ 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tgagcgctggattaaaggcctgcggcaccattgcctggcctatgatttggttttaagtta 476
Query: 117 ---aagtcctgtaggcacttgactgagtgaatggatctaggtctgcacgtctgttgtgct 173
||||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||
Sbjct: 475 gcaaagtcctgtgggcac-tggctgagtgaatggatctaggtctgcacgcctgttgtgct 417
Query: 174 gggaaaaccaacttctaacatagctgcacttttccactctcaggtgtatcctggtgcaga 233
||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 416 ggg-aaaccaacttctaacatagccgtacttttccactctcaggtgtatcctggtgcaga 358
Query: 234 cgatgaattccacagtgctacagagtgcgaag-----------ggtggggagagtgtgag 282
|||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 357 cgatgaattccacagtgctacagagtgcgaagggtggggagctggtggggagagagtgag 298
Query: 283 cctgagatttcatactgagtgtgtttgatgaggtagttagtctttccaggtcctgactgg 342
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 297 cctgagatttcatactgagtgtgtttgatgaggtagttagtctttccatgtcctgactag 238
Query: 343 ggaagctctggcaggagctgagaactcaatgccacaaggtcacatctttatctctatggg 402
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 237 ggaagctctggcaggagctgagaactcaatggcacaaggtcacatctttatctctatggg 178
Query: 403 attcatctggagcagt 418
||||||||||||||||
Sbjct: 177 attcatctggagcagt 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 816
Length adjustment: 9
Effective length of query: 409
Effective length of database: 807
Effective search space: 330063
Effective search space used: 330063
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_a06.g1 MSMg01no145_a06.g1 CHROMAT_FILE:
MSMg01no145_a06.g1 PHD_FILE: MSMg01no145_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:59 2005
(509 letters)
>mm_chr15_92828213_92829122
Length = 910
Score = 814 bits (421), Expect = 0.0
Identities = 452/463 (97%), Gaps = 3/463 (0%)
Strand = Plus / Plus
Query: 1 tccgtgtctcaggcagggcatctgcatttcaattctctgaca-cattcagatgaatcaag 59
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tccgtgtctcaggcagggcgtctgcatttcaattctctgacaacattcagatgaatcaag 260
Query: 60 caatagaaaaacaccaccacacaaagacttgggtgggtggatatgggtgctaaggatgca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatagaaaaacaccaccacacaaagacttgggtgggtggatatgggtgctaaggatgca 320
Query: 120 gcctcttggccaagaagttgcaaatgagagataagagacaggctagaacaacttcagagt 179
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 321 gcctcttggccaagacgttgcaaacgagagataagaaacaggctagaacaacttcagagt 380
Query: 180 ggacctgagaagtcaccaacaccatctgttgacttgtttcctgttctctgtgctgctttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacctgagaagtcaccaacaccatctgttgacttgtttcctgttctctgtgctgctttg 440
Query: 240 agttttagcaagatctttatgttgtgtccaaaaaaaaaaaaagaaaaaaagaaaaatgca 299
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 agttttagcaagatctttatgttgtgtccaaaaaaaaaaa--gaaaaaaagaaaaatgca 498
Query: 300 cccttacagaaaggacagggaccagaggaaaagatggagggatgacagggaaaccagaaa 359
|||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 499 cccttacagaaaagacagggacccgaggaaaagatggagggatgagagggaaaccagaaa 558
Query: 360 agagagcaaggaggagtgaccactgttgaagtacatgcatttgtgtgaagtgggagccat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agagagcaaggaggagtgaccactgttgaagtacatgcatttgtgtgaagtgggagccat 618
Query: 420 tgctgtgtgcaatcaacatgcactgacagaaagggaaaatgca 462
|||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 619 tgctgtgtgcaatcaacacgcactgacagaaagggaaaatgca 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space: 449100
Effective search space used: 449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
