BAC Information

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BAC

Clone NameMSMg01-145L07
Chromosome15 (Build37)
Map Location 39,036,531 - 39,036,762
singlet/doubletsinglet
Overlap geneRims2
Upstream geneOdf1, LOC382986, LOC667563, Klf10, Azin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215
Downstream geneTm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145L07.T7 (MSMg01no145_l07.b1)MSMg01-145L07.TJ (MSMg01no145_l07.g1)
ACCAG349437AG349438
length693692
length of high quality
(start - end)
495 (65 - 559)232 (329 - 560)
definitionCHROMAT_FILE: MSMg01no145_l07.b1 PHD_FILE: MSMg01no145_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:52 2005CHROMAT_FILE: MSMg01no145_l07.g1 PHD_FILE: MSMg01no145_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGA
ATTCGCATAGTGCCCATTATTGGCTCATTCAACATTAACAGTAAGATTAC
ATGTCAGCAAAAGGGCATCAGGACTTTGTTTCTGTGGGCTGGGGGCTTAT
CTTTGTTCACATAGCGACCAGTTGATGTATGACTTTACCCGGCGTCAAGG
GGCAGTAGACAGAGGGGAGGTTCCGGCCAGATGGTGTCAAGTCAGACAAG
ATAGCCCTGCCTGCGTCCTTGCATTCCTTTTCATCTTTACAGTTAAGAGC
CCTGCCCTGGCATATGGGCTCATAGACAACTCTTTTACATGAATCACAAG
TTACAAAATCTCATTTTCCTTCAAGATTTGTTTTGTTTTTTAAAGATTTA
TTTATTTATTTATTTTATGTTCATGAGTGCTCTATCTGCATGTACACCTG
CATGCCAGAAGAGAGTATTAGATCCCATTATAAATGGTAGTGAGCTACCA
TGTGGTTTCTAGGAATTGATCTCAGGACCTCTGGAAAAGCAACCAGCGCT
CTTAACCACTGAGCCATCTCTCCAGCCCTACAGTTTAAGTTTTATACAAC
CAGTAATGTGGTACAGCAGCTGGCATCTCTCCTCCCACTGCTTCACATTC
ACAAATATCACATTGGTATCCTTGAATAACCATGATCAGAAAC
NCGATGCAGTGGGAGCCTGGCGGCGCCTGTTTCCTACTGGGGGTGAACTA
TAGAAGTTACGAAGAAATCCAACTGAGGAATATTGAATGGCTGAGAAGCA
CCTAAAGAAATGTTTACCATCCTTAGTCATCAGGGGAATGAAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAC
TCAGGTGACAGCAGATGCTGGAGAAGATGTGGAGAAAAAGGAACACTCTT
CCACTACTGGTGGGATTGCAAGCTGGTACAACCACCCTGGAAATCAATCT
GGTGGTTTCTCATATANATTGTTATAGNACTACCAGAGGACCCAGCTATA
CCACTCCTGGACATATGCCCAGAAGATGCTCCAACATATAACAAGGACAC
ATGCTCATGATCTTTTTGCTTCAAGCTCAAATAGAAACTTCTAGCAAATA
GAACATTTGTACAAAGAAGATCTGATGACCTAAACTTGTTCCCCAAAACT
CATTAGGTGGCAGAAAATAGTTCTCAAAAGTAGTTCTTTGACTTTAAATA
TATGTACTGTGACACATGTGTACCAATAGTCATACATTCATGCACAGAAA
ATAATTTAGCTAATTATCTACTATTTTTAAAGGGCTGGGAATACATGCCT
AACACCTATTATTCAGTTCTGCTACCCCACCCTTATTAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_l07.g1 MSMg01no145_l07.g1 CHROMAT_FILE:
MSMg01no145_l07.g1 PHD_FILE: MSMg01no145_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:52 2005
         (232 letters)



>mm_chr15_39036206_39036837
          Length = 632

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaccagaggacccagctataccactcctggacatatgcccagaagatgctccaacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 actaccagaggacccagctataccactcctggacatatgcccagaagatgctccaacata 498

                                                                       
Query: 61  taacaaggacacatgctcatgatctttttgcttcaagctcaaatagaaacttctagcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taacaaggacacatgctcatgatctttttgcttcaagctcaaatagaaacttctagcaaa 438

                                                                       
Query: 121 tagaacatttgtacaaagaagatctgatgacctaaacttgttccccaaaactcattaggt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taggacatttgtacaaagaagatctgatgacctaaacttgttccccaaaactcattaggt 378

                                                               
Query: 181 ggcagaaaatagttctcaaaagtagttctttgactttaaatatatgtactgt 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggcagaaaatagttctcaaaagtagttctttgactttaaatatatgtactgt 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)