BAC Information

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BAC

Clone NameMSMg01-149C13
Chromosome15 (Build37)
Map Location 26,265,796 - 26,266,322
singlet/doubletsinglet
Overlap genenone
Upstream geneBasp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622, AK162044
Downstream geneFbxl7, LOC622531, LOC625311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149C13.T7 (MSMg01no149_c13.b1)MSMg01-149C13.TJ (MSMg01no149_c13.g1)
ACCAG351956AG351957
length705691
length of high quality
(start - end)
167 (160 - 326)527 (82 - 608)
definitionCHROMAT_FILE: MSMg01no149_c13.b1 PHD_FILE: MSMg01no149_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:19 2005CHROMAT_FILE: MSMg01no149_c13.g1 PHD_FILE: MSMg01no149_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
GCGCGGAATTCTACCCTATCTCCACAAATATTTGTTTCCCATTTTCCTCA
AGCTATTCCATAAAATAGAAGCAGAAGGAACACTACATAACTCATTCTAT
GAAGCCACGATTACTCTGATACCTAAACCACACAAGGACCCAGAAAAGAG
AACTTCCGACCAATCTCGCTTATGAATATTGAACAAAAATACTCAATAAA
ACTCTTACAAACAATCCAAAAACACATCAAAACCATCATTTGCCATGATC
AAGTAGGCTTCATCCCAGGGATGCAAGGTTGTTTTAATATACAAAAATTC
ATTAGTGTAATCCACTATATAAACAAACTCAAAGGGAAAAAAAACACATG
ATGATCTCCTTAGATGCAGAAAACGCATTTGACAAAATACAACACCCCTT
CATGTATTGGAGAGATCAGGAATTCAAGGCCCATACTTAAATATAATGAA
AAXXXXXXXXXXXXXXXXXXXXGGCAATATCAAATTACATGAAGACATAC
TTGAAGCAATCCCACTGAGATCAGGGACAAGAAAAGGATGCCCACTCTCC
CTGTGTTTACTCAATATAGTACTCTAACTGCTAGCTAGAACAATGAGACA
GCATATAGAGATCACGTGTATATAAGTTGGTAAAGAAGAATTAAGGGGAT
CACTA
CACTCATGAAGTGGTAGCCTGGCGGCGCCTGGCCTTCCAATAAGGTGACC
TATAGAAGATTCTGCGAAATCATCAGAATACATAGAAACTCTGGAAGACA
GGAAGGCATTGTCTCCAGCTGTGTGTCCAGTGGGAAATCCACCATGAGCC
AACAGATAGCCTACATTGACACAGGCAGACCCTGTTAAACTCAGTGGGTC
ACAAAACACAACAAAGGGGCATAAAGTGGGAAAGGGACTTGTGGAGAAGA
GGGTGGGCTCAGAGGGGTAAGCATAATATATGCGTATACAATTGCCAAAT
AACAAACTTAATAAAAGATTGTTTTTAAGAATGGAATTTATACAAATGCA
TTCAAAATGATGATATACTACTGGTCAGTAAACCCAGGAAGTAACATACA
ACCTCTCTAATCAGAGAAACAAAAATTAAAAAACAGAGTATCACTTTTAC
GCAACATTAATAATTCAGTAATAATTAACTATTTATGACTTCCTTGACCA
TGAGGATATGGAAATGAGCCCTGTCCGACAATGTGGCTGGAGAAGGCAGT
CTCACAGAGTGCTGATGGCAGACTAAATCCAACACTTCCACATCTGATGT
GGTCACACAGCAAGGGGACCTCATGTGTGTACAGAATTCACTACACTGCC
TTTATGACCGTGACCATTTGAAACCGCTAAAAGGAAAGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_c13.g1 MSMg01no149_c13.g1 CHROMAT_FILE:
MSMg01no149_c13.g1 PHD_FILE: MSMg01no149_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:19 2005
         (527 letters)



>mm_chr15_26265596_26266522
          Length = 927

 Score =  980 bits (507), Expect = 0.0
 Identities = 522/527 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagaaactctggaagacaggaaggcattgtctccagctgtgtgtccagtgggaaatcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 atagaaactctggaagacaggaaggcattgtctccagctgtgtgtccagtgggaaatcca 668

                                                                       
Query: 61  ccatgagccaacagatagcctacattgacacaggcagaccctgttaaactcagtgggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ccatgagccaacagatagcctacattgacacaggcagaccctgttaaactcagtgggtca 608

                                                                       
Query: 121 caaaacacaacaaaggggcataaagtgggaaagggacttgtggagaagagggtgggctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 caaaacacaacaaaggggcataaagtgggaaagggacttgtggagaagagggtgggctca 548

                                                                       
Query: 181 gaggggtaagcataatatatgcgtatacaattgccaaataacaaacttaataaaagattg 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 547 gaggggtaagcataatatatgcgtatacaattgccaagtaacaaacttaataaaagattg 488

                                                                       
Query: 241 tttttaagaatggaatttatacaaatgcattcaaaatgatgatatactactggtcagtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 487 tttttaagaatggaatttatacaaatgcattcaaaatgatgatatactagtggtcagtaa 428

                                                                       
Query: 301 acccaggaagtaacatacaacctctctaatcagagaaacaaaaattaaaaaacagagtat 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 427 acccaggaagtaacatacaacctctctagtcagagaaacaaaaattaaaaaacagagtat 368

                                                                       
Query: 361 cacttttacgcaacattaataattcagtaataattaactatttatgacttccttgaccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cacttttacgcaacattaataattcagtaataattaactatttatgacttccttgaccat 308

                                                                       
Query: 421 gaggatatggaaatgagccctgtccgacaatgtggctggagaaggcagtctcacagagtg 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 307 gaggatatggaaatgagccctgtctgacaatgtggctggagaaggcagtctcacagagtg 248

                                                          
Query: 481 ctgatggcagactaaatccaacacttccacatctgatgtggtcacac 527
           |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctgatggcggactaaatccaacacttccacatctgatgtggtcacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)