BAC Information

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BAC

Clone NameMSMg01-149C23
Chromosome15 (Build37)
Map Location 26,265,800 - 26,266,333
singlet/doubletsinglet
Overlap genenone
Upstream geneBasp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622, AK162044
Downstream geneFbxl7, LOC622531, LOC625311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149C23.T7 (MSMg01no149_c23.b1)MSMg01-149C23.TJ (MSMg01no149_c23.g1)
ACCAG351974AG351975
length720718
length of high quality
(start - end)
271 (332 - 602)533 (73 - 605)
definitionCHROMAT_FILE: MSMg01no149_c23.b1 PHD_FILE: MSMg01no149_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:22 2005CHROMAT_FILE: MSMg01no149_c23.g1 PHD_FILE: MSMg01no149_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGGATCGGCGGAA
TTCACCAGACCTTCCCCTAAAAATGTTTCCCATTTTCCTCAAACTATTCC
ATAAAATAGAAGCAGAAGGAACACTACATAACTCATTCTATGAAGCCACA
ATTACTCTGATACCTAAACCACACAAGGACCCAAAAAAGAGAACTTCCGA
CCAATCTCGCTTATGAATATTGAACAAAAATACTCAATAAAACTCTTACA
AACAATCCAAAAACACATCAAAACCATCATTTGCCATGATCAAGTAGGCT
TCATCCCAGGGATGCAAGGTTGTTTTTATATACAAAAATTCATTAATGTA
ATCCACTATATAAACAAACTCACAGGGACAAAAAACACATGATGATCTCC
TTAGATGCAGAAAAAGCATTTGACAAAATACAACACCCCTTCATGTATTG
GAGAGATCAGGAATTCAAGGCCCATACTTAAATATAATGAAAACAATTTA
CTGCAAACCAACAGCCAATATCAAATTACATGAAGACATACTTGAAGCAA
TCCCACTGAAATCAGGGACAAGAAAAGGATGCCCACTCTCCCTGTGTTTA
CTCAACATAGTACTCTAAGTGCTAGCTAGAACAATGAGACAGCAAAAAGA
GATCAAGTGTATATTAATTGGCAAACAACAAATAAAGGTATCACTATTTG
CAGATGATATGATAGTATAN
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATCAGAATACATAGAAACTCTGGAAGAC
AGGAAGGCATTGTCTCCAGCTGTGTGTCCAGTGGGAAATCCACCATGAGC
CAACAGATAGCCTACATTGACACAGGCAGACCCTGTTAAACTCAGTGGGT
CACAAAACACAACAAAGGGGCATAAAGTGGGAAAGGGACTTGTGGAGAAG
AGGGTGGGCTCAGAGGGGTAAGCATAATATATGCGTATACAATTGCCAAA
TAACAAACTTAATAAAAGATTGTTTTTAAGAATGGAATTTATACAAATGC
ATTCAAAATGATGATATACTAGTGGTCAGTAAACCCAGGAAGTAACATAC
AACCTCTCTAATCAGAGAAACAAAAATTAAAAAACAGAGTATCACTTTTA
CGCAACATTAATAATTCAGTAATAATTAACTATTTATGACTTCCTTGACC
ATGAGGATATGGAAATGAGCCCTGTCCGACAATGTGGCTGGAGAAGGCAG
TCTCACAGAGTGCTGATGGCAGACTAAATCCAACACTTCCACATCTGATG
TGGTCACACAGCAAGGGGACCTCATGTGTGTACAGAATTCACTACACTGC
CTTTATGACAGTGACAATTTGAAACCGCTAATAGGAAAGCGCTTAACTTG
CCAGATTCATTCTAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_c23.g1 MSMg01no149_c23.g1 CHROMAT_FILE:
MSMg01no149_c23.g1 PHD_FILE: MSMg01no149_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:22 2005
         (533 letters)



>mm_chr15_26265600_26266533
          Length = 934

 Score =  994 bits (514), Expect = 0.0
 Identities = 529/534 (99%), Gaps = 1/534 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagaatac-atagaaactctggaagacaggaaggcattgtctccagctgtgtgtccag 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 atcagaatacaatagaaactctggaagacaggaaggcattgtctccagctgtgtgtccag 675

                                                                       
Query: 60  tgggaaatccaccatgagccaacagatagcctacattgacacaggcagaccctgttaaac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgggaaatccaccatgagccaacagatagcctacattgacacaggcagaccctgttaaac 615

                                                                       
Query: 120 tcagtgggtcacaaaacacaacaaaggggcataaagtgggaaagggacttgtggagaaga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tcagtgggtcacaaaacacaacaaaggggcataaagtgggaaagggacttgtggagaaga 555

                                                                       
Query: 180 gggtgggctcagaggggtaagcataatatatgcgtatacaattgccaaataacaaactta 239
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 554 gggtgggctcagaggggtaagcataatatatgcgtatacaattgccaagtaacaaactta 495

                                                                       
Query: 240 ataaaagattgtttttaagaatggaatttatacaaatgcattcaaaatgatgatatacta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ataaaagattgtttttaagaatggaatttatacaaatgcattcaaaatgatgatatacta 435

                                                                       
Query: 300 gtggtcagtaaacccaggaagtaacatacaacctctctaatcagagaaacaaaaattaaa 359
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 434 gtggtcagtaaacccaggaagtaacatacaacctctctagtcagagaaacaaaaattaaa 375

                                                                       
Query: 360 aaacagagtatcacttttacgcaacattaataattcagtaataattaactatttatgact 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaacagagtatcacttttacgcaacattaataattcagtaataattaactatttatgact 315

                                                                       
Query: 420 tccttgaccatgaggatatggaaatgagccctgtccgacaatgtggctggagaaggcagt 479
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 314 tccttgaccatgaggatatggaaatgagccctgtctgacaatgtggctggagaaggcagt 255

                                                                 
Query: 480 ctcacagagtgctgatggcagactaaatccaacacttccacatctgatgtggtc 533
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 254 ctcacagagtgctgatggcggactaaatccaacacttccacatctgatgtggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space:   483252
Effective search space used:   483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)