BAC Information

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BAC

Clone NameMSMg01-151B03
Chromosome15 (Build37)
Map Location 28,741,733 - 28,742,277
singlet/doubletsinglet
Overlap genenone
Upstream geneTrio, LOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151B03.T7 (MSMg01no151_b03.b1)MSMg01-151B03.TJ (MSMg01no151_b03.g1)
ACCAG353336AG353337
length733739
length of high quality
(start - end)
653 (44 - 696)554 (71 - 624)
definitionCHROMAT_FILE: MSMg01no151_b03.b1 PHD_FILE: MSMg01no151_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:48 2005CHROMAT_FILE: MSMg01no151_b03.g1 PHD_FILE: MSMg01no151_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTATATATTCCGGATATTAGCTTTCTGTTAGATATAGGGTTATTGA
AGATTTGTTCCCAATCTGTAGGTTGCCTATTTGTCCTATTGACAGTCACT
TTTGTCTTACAGAAGCTTTTCAGTTTCATGAGGTCCCATTGGTCAATTGT
TGATCTTAGAGCCTGAGCCATTGGTGTTCTGGTCACGGAATTTCCCCCTG
TGCCAACAATTTCAAGACTCTTTCCCACTTTTTCTTCTATTAGATTCAGT
GTGTCTGGTTTTATGCTGAGGTTCTTGATCAACTTGGACTTGAGCTTTGT
GCAAGGTGATAAATATGGAATGATTTTCAGTCTTCAACATACAGATTACC
AGTTAGACCAGCATCATTTATTGAAGATGCTTTCTTTTTCCACTGTATGG
TTTTCATTTCTTTGTCAAAGATCAAGTGTCCATTTGTATGTGAGTTTATT
TCTGGGTCTTCAATTCTATTCTATTGATTGGCCTGTCTCAGAACATGTGG
CCTTTAACACTATTGCTTTGTAGTACTACTTGAAGTCAGGGATGCTGACT
CCCCCTGATGATCTTTAGTTGTTGAGAATTGTTTTGGATATCCTGCAATT
TTTGTTTTTCCATATGAGGTTGAGAATTGTTATTTCCATATCTATGAACA
CTTGTGTTGGAATTTTAATGGGTTGGAGGAAAG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTACATCTGGATCCTTAGGCAGCAGGAAGAA
AGAGGCTCTGGACTTGGAATGGGCCCTTTGAAATCTCAAATCCCACTGCC
AGTGACACATATCCTTCAACAAGGACACACCTCCTAATTGATTACATAGT
GCCACTCCCTAATGACCAAGTATTTAAATCTATGAGCCTATGAGGGCCAG
TTTCATGTAAATAAGACACTCCCCCTAAAGTGATAAGATTCTCCCACTTC
CCTATTCACCCAAATTCATATTCTCTGTTGTTCTCAACCAAAAACAGAAG
GAAACAACAACAACGAAAAGTAACCACTTAGTAAGCAGGGAAGGGAGAGG
GATGGGAGTGGGAGTGGTTAAGTCTACTTCCTCTTCTCCATGTTGGAATT
TGTCTGGTTTGTACCTGTGGTTGTTGACACAATCTATATGAGCTTATATG
TATGAGCCTTACTAAGTCTGAAAAATACTGTTCCTTGGAGTAAGCCATCC
CCTCTGGATCTCACAATCTTTCCTCCTCCTCTTATTCACAGATTCCTGAG
GTTTGAAAGGACATTCTACTTAGTCCAGAGTGCTCAAAAATCTCCTACTC
TCTGCATGTTTTTCAAATGGGGAGCTCTGTGTGAATTATCCCCTACATGT
TGCTCTCCTGCCCGACCTGGACCATTTTGAAAAAATGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_b03.g1 MSMg01no151_b03.g1 CHROMAT_FILE:
MSMg01no151_b03.g1 PHD_FILE: MSMg01no151_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:48 2005
         (554 letters)



>mm_chr15_28741533_28742486
          Length = 954

 Score =  957 bits (495), Expect = 0.0
 Identities = 532/545 (97%), Gaps = 2/545 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatctggatccttaggcagcaggaagaaagaggctctggacttggaatgggccctttg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tacatctggatccttaggcaacaggaagaaagaggctctggacttggaatggggcctttg 260

                                                                       
Query: 61  aaatctcaaatcccactgccagtgacacatatccttcaacaaggacacacctcctaattg 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aaatctcaaatcccactgccagtgacacatatccttcaacaaggccacacctcctaattg 320

                                                                       
Query: 121 attacatagtgccactccctaatgaccaagtatttaaatctatgagcctatgagggccag 180
           ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 attgcatagtgccactccctaatgaccaagtatttaaatctacgagcctatgagggccag 380

                                                                       
Query: 181 tttcatgtaaataagacactccccctaaagtgataagattctcccacttccctattcacc 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcatgtaaataacacactccccctaaagtgataagattctcccacttccctattcacc 440

                                                                       
Query: 241 caaattcatattctctgttgttctcaaccaaaaacagaaggaaacaacaacaacgaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaattcatattctctgttgttctcaaccaaaaacagaaggaaacaacaacaacgaaaag 500

                                                                       
Query: 301 taaccacttagtaagcagggaagggagagggatgggagtgggagtggttaagtctacttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaccacttagtaagcagggaagggagagggatgggagtgggagtggttaagtctacttc 560

                                                                       
Query: 361 ctcttctccatgttggaatttgtctggtttgtacctgtggttgttgacacaatctatatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 561 ctcttctccatgttggaatttgtctggtttgtacctgtggttgttgacacagtctatttg 620

                                                                       
Query: 421 agcttatatgtatg--agccttactaagtctgaaaaatactgttccttggagtaagccat 478
           |||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 agcttatatgtatattagccttactaagtctgaaaaatactgttccttggcgtaagccat 680

                                                                       
Query: 479 cccctctggatctcacaatctttcctcctcctcttattcacagattcctgaggtttgaaa 538
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 cccctctggatctcacaatctttcctcctcctcttattcatagattcctgaggtttgaaa 740

                
Query: 539 ggaca 543
           |||||
Sbjct: 741 ggaca 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)