BAC Information

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BAC

Clone NameMSMg01-152D09
Chromosome15 (Build37)
Map Location 70,189,703 - 70,190,203
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152D09.T7 (MSMg01no152_d09.b1)MSMg01-152D09.TJ (MSMg01no152_d09.g1)
ACCAG354159AG354160
length730730
length of high quality
(start - end)
560 (51 - 610)501 (80 - 580)
definitionCHROMAT_FILE: MSMg01no152_d09.b1 PHD_FILE: MSMg01no152_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:15 2005CHROMAT_FILE: MSMg01no152_d09.g1 PHD_FILE: MSMg01no152_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTATTGTCCCCGGTATTACACTATCTCTTTGAGTAAAAG
TTAGGTCACTGCCCTTCACAGGAATTTACCATCACTAAGGAAGAAAAACG
TTTCTGACCGTAGGAGAAACCAGAATAGATATTTAGAATTATAGCTGAGT
TACACCTATCTATATACAGGAATTTACAATGGTTTTGGAAGTAGATCCGG
CTGTGGTTTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAAGGGA
ACTCCCTAGTTAGAACCATGACTTGGGTGTAAAAGCCCTTGCCCTAGGAG
TGAAAAGTTCTCACACCTGGCTTCTAAGACTATAGTTGACCTTAGATAGG
GCTGACTCTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTCTTTGCA
TTTTCATTTCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTTACCTC
ATTTGTACTTTGTGGGTATGTCACCCAACTACCTTGTTGTCTTCTGCATA
AAAAGTCTGATGTTCGATTTGAAAAATTACATTCAGATTCCACACAAACT
CTCCTGCGTGTGTGTCTGTCTGTCATTCATCCACGCTTTGCCCACTCGCG
TCGAGAGACCCCCATTCCACGCAGACATAGGGATCCAGAAGGCCTGTGGC
AGCTTCTGTCCACTATTTTGGTGCACATAC
NCACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATTTAATTGAAAGGCCAT
TGCCTTAATGAATAAGGTAAGAGGTAATCCGCATCTCCAGGAGTGGTACC
CTGATGCACATAGCAACTCATGCACTCATGCATCTCTAGGGTTATAGGGG
CTGTGTGCTCTTTATCTAACTGTTGGCTGGAAATATCCTGGACTGTACTC
CCTTTCCATATGCCCTTATAAGGTTCCTTCCCTTGGCATCAGCTACTGCT
TCAATGTGTTAAAGGGGTCAGGGGGATTGACATGTGTAGGCTGGTATAAG
AAACTTCAAAGCTTGGTGAAAAGTACCATCAGCTGAGTTGCTCTAAGTAT
TTCTCAGTATTTAAGCACAACACAAAACATATCCTCTACTCATTTGCGTG
TAGGATGGCACATTCTTGAGATTTTGCAGTTCTTAATTTTAATCAAGTAT
TTTACTTATTTACAGCCCTAATGCTGCTCTCCCTCCTCATCCCCCTTCCC
ATTGTTTTTGACCTTTTCCCCCTCCCCTTTGTTTTTGAGCAGGTACTCCC
CACTTCCCCTGGCCATTATCTATAGGATTAGGCACTATTCTTTCTCACTG
TTACATTATGTGTTGGAGTCCATAGACCCATCTATGTCTGCTCTTTTGAA
AGACGCTCACTGTCCCTCTTCCACACTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_d09.g1 MSMg01no152_d09.g1 CHROMAT_FILE:
MSMg01no152_d09.g1 PHD_FILE: MSMg01no152_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:15 2005
         (501 letters)



>mm_chr15_70189503_70190403
          Length = 901

 Score =  891 bits (461), Expect = 0.0
 Identities = 491/501 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatttaattgaaaggccattgccttaatgaataaggtaagaggtaatccgcatctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatttaattgaaaggccattgccttaatgaataaggtaagaggtaatccgcatctcca 260

                                                                       
Query: 61  ggagtggtaccctgatgcacatagcaactcatgcactcatgcatctctagggttataggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagtggtaccctgatgcacatagcaactcatgcactcatgcatctctagggttataggg 320

                                                                       
Query: 121 gctgtgtgctctttatctaactgttggctggaaatatcctggactgtactccctttccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtgtgctctttatctaactgttggctggaaatatcctggactgtactccctttccat 380

                                                                       
Query: 181 atgcccttataaggttccttcccttggcatcagctactgcttcaatgtgttaaaggggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcccttataaggttccttcccttggcatcagctactgcttcaatgtgttaaaggggtc 440

                                                                       
Query: 241 agggggattgacatgtgtaggctggtataagaaacttcaaagcttggtgaaaagtaccat 300
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 agggggattgacacgtgtaggctggtataagaaacttcaaagcttggggaaaagtaccat 500

                                                                       
Query: 301 cagctgagttgctctaagtatttctcagtatttaagcacaacacaaaacatatcctctac 360
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 501 cagctgagttgctctaagtatttctcaatatttaagcacaacgcaaaacatatcctctac 560

                                                                       
Query: 361 tcatttgcgtgtaggatggcacattcttgagattttgcagttcttaattttaatcaagta 420
           ||||||| ||| | |||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 561 tcatttgggtggaagatggcacattcttgagattttgcagttcttatttttaattaagta 620

                                                                       
Query: 421 ttttacttatttacagccctaatgctgctctccctcctcatcccccttcccattgttttt 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttacttatttacagccctaatgttgctctccctcctcatcccccttcccattgttttt 680

                                
Query: 481 gaccttttccccctccccttt 501
           |||||||||||||||||||||
Sbjct: 681 gaccttttccccctccccttt 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)