BAC Information

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BAC

Clone NameMSMg01-154H06
Chromosome15 (Build37)
Map Location 48,594,020 - 48,594,251
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3
Downstream geneEG665146, LOC100039600, LOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154H06.T7 (MSMg01no154_h06.b1)MSMg01-154H06.TJ (MSMg01no154_h06.g1)
ACCAG355742AG355743
length707715
length of high quality
(start - end)
321 (44 - 364)232 (73 - 304)
definitionCHROMAT_FILE: MSMg01no154_h06.b1 PHD_FILE: MSMg01no154_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:05 2005CHROMAT_FILE: MSMg01no154_h06.g1 PHD_FILE: MSMg01no154_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCTTTCAAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAA
ATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGT
TTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCC
CTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTTCTTTAA
TGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATCG
ATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTT
CTGTGGTTTAGGTATCATAGTAATAGTGTCTTCATAAAATGAGTTGGGTA
GAGTACCTTCTACTTCTATCTTGTGAAATAGTTTGTGCACAACTGGAATT
ATATCTTCTTTGAAGGTCTGACAGAACTCTGTACTAAACCCATCTGGTCC
TGGGTTTTTTTTGTTTGGGAGACTATTAATAACTGCTTCTATCTCTTTAG
GCGATATGTTTATTGCTCAGAAGGTTAACTTGATTCTGATTCTACTTTGG
TACCTGGCACCTGTCCAGAACTTTTTCCATTCCGCCTATACTCCCCTTTT
TCGTTTGCTTTCAACATTTGTTTTACCATCTGACGCCCGCTCAGCCATTT
TTTCCTT
CATTATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTTTTTCCTACATCAGACTCTTGAAT
GCTGAGATTACAGGCATGTACTATCATCCCCAACTTTGGAATAACACTTT
ATTGCAAGTAGAATATGCTCCAAGGATTTTATCCCATGTGTGACATAAAT
TTTTTTATTGTAAAAATCCTGTTAACTCAAAAATATTCTTTCTTGCAAAA
TAGTAGTTACAGGTTTTTTGTTTGTTTGGTTGGTTGGTTGGTTAGTTGGT
TGTTTTTCCCCTCCAACTTTTTTTAACAATTCATACTCTTACTTCCCCCC
ACTTTTTTTTCCCCTCCCCTATACATCCCACTCCTCCTTTTCTTTTTTCT
CCTTTCCCTCCTCCCTTTTTTTTCTTTTTTTTACCACCTTCTTCTCCTTT
CCCCTTTTTTACTTTATTCCCTTCATATATCTTTTTCCCACCTTTTCTTT
TTTCTTCCCCCTCCCCCCTTTTTTTACCCCCTTTAATCACCTCTTTCTTC
ATATTACTTTCTACTTCTCTCATTTACTTTCGCCTAAAACTCTTTTTACA
TCCCCATTCATCCCCAACAACTTTCATCAAATACTTACCCCAATTTTCCC
CACACTTTTACCACATTTTATTCCCCTTTCCCTCCCCACTTTTACTTCCT
TCATCCTTTCCGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_h06.g1 MSMg01no154_h06.g1 CHROMAT_FILE:
MSMg01no154_h06.g1 PHD_FILE: MSMg01no154_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:05 2005
         (232 letters)



>mm_chr15_48593820_48594451
          Length = 632

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttttcctacatcagactcttgaatgctgagattacaggcatgtactatcatcccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttttcctacatcagactcttgaatgctgagattacaggcatgtactatcatcccca 260

                                                                       
Query: 61  actttggaataacactttattgcaagtagaatatgctccaaggattttatcccatgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actttggaataacactttattgcaagtagaatatgctccaaggattttatcccatgtgtg 320

                                                                       
Query: 121 acataaatttttttattgtaaaaatcctgttaactcaaaaatattctttcttgcaaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acataaatttttttattgtaaaaatcctgttaactcaaaaatattctttcttgcaaaata 380

                                                               
Query: 181 gtagttacaggttttttgtttgtttggttggttggttggttagttggttgtt 232
           |||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 381 gtagttacaggttttttgtttgtttgtttggttggttggttatttggttgtt 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)