BAC Information

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BAC

Clone NameMSMg01-155A24
Chromosome15 (Build37)
Map Location 84,500,678 - 84,501,012
singlet/doubletsinglet
Overlap genenone
Upstream geneScube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l
Downstream geneArhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155A24.T7 (MSMg01no155_a24.b1)MSMg01-155A24.TJ (MSMg01no155_a24.g1)
ACCAG356184AG356185
length772724
length of high quality
(start - end)
336 (80 - 415)487 (78 - 564)
definitionCHROMAT_FILE: MSMg01no155_a24.b1 PHD_FILE: MSMg01no155_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:53 2005CHROMAT_FILE: MSMg01no155_a24.g1 PHD_FILE: MSMg01no155_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCC
GCGGAATTCACTGGGCCTTTCCGGAAGAGTCTCTGAGGTTGTCAAGTTCC
CTGGGGAAAATCTGTGGTCCCTGGAGCTGCCGCCACAACATCTGGGGATG
GGACAGGGAACTGGCCACACTAGTCACTAGTGGGGACCCTGTGGGCTGCC
AAACCAGGGCCACAATTCTAGTTCTGGCCACAATTCCAGTTCGTCTGGCT
GCCTTTGGTGTCTGCCCCTCATTCCCGCCTGCTCAGCTGCCCCTCGTAGG
CCTCCCTGCCGCCGCCGCTTCTTGCTGCTTCTCCTTCCAAAGGGCGCTGT
GTCTTCAAGCCCCTGCGGTAAGTTATCCAGCTCTGCAGGGCCTTCCTGGC
TCTGTGTGTGTGTGAAACNCCCCCCCCTTACCATAAAACAATAATTCCCC
CCCCCCCCCTTTTTTTATCATACCCTTTCCTCCCCCCTTTCCCCTTTCCC
CCTTCCCCTTTCCCCTATTTCCCCTTTTCCTTTCCCCCTACCCTTTCCCT
TTCCCCCTATTTATCTATACTACACCACACACCCATTTTATACTCCCCCC
TTTCCTTTCCCCTCCTACCCCCTTCCCCCCTTTTCCCTTTCCCCCTTTTT
TTCCCCCTTTTTCCCCCCCCTTTCCCCCCCCCGCTTCTCTTTTTTTCCTT
TATCCCCTTTCCCATTTCCCCCCTTTATTATCCCCCCTTCCTCCCTCCCC
CCCCCCATTTTTTCCCCCCCCT
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGATTGATGTAGGAAGGCTC
AGCCCCACTGTTGGTGATGTCATCCCTGCGTAGGTGGTCCTCGGTGGTGT
AAGAAATAGCTGAATGTGAGCCTGGAACAGCATTCCTGCATGATACCCTT
GCTTTTAATGGCTTTGCAGTATTCCATTGTGTAAATGAACCACATTTTCT
TTACCCATTCTTCAACTGAGGGACATCTAGGTTGTTTCCAGTTTTTGGCT
ATTACAAATAAAGCTGCTATGAACATATTTGAGCAAGCGTCCTTGTGGGA
TGGTGGAGCATCTTTTGGGTGTAAGGCCAGGAGTGGTATAGCTAGGCCTT
GAGGTAGAACTATTTCCAATTTTCTGAGAAACCACCAGATTGATTTCCAG
AGTGGTTCACATTCCCAGCAGCAGTGGAGAGGTTGTTTCCTGCTGGCTTT
GTCCATTGGCATGACAGCTTTCTGCCAAGTCTGTCATGTTTTCCTTCTGC
ACAGTGTATATAAGATGCTGTCATTCTTAATAAACTTGCTCAGCCTAAGA
CTCAGCTTGCGTAAGAGCTCCTGATCCCAGCTTCACTTACCTTTATTTTC
CGATCCTCTGGCTCTTCTCTCTGGAACCTGTCCCTGAAGAACCCTTTGCT
GGTTCCGTGTCAGTGCTTGCCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_a24.b1 MSMg01no155_a24.b1 CHROMAT_FILE:
MSMg01no155_a24.b1 PHD_FILE: MSMg01no155_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:53 2005
         (336 letters)



>mm_chr15_84500478_84501213
          Length = 736

 Score =  625 bits (323), Expect = 0.0
 Identities = 332/335 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctgaggttgtcaagttccctggggaaaatctgtggtccctggagctgccgccacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgaggttgtcaagttccctggggaaaatctgtggtccctggagctgccgccacaac 260

                                                                       
Query: 61  atctggggatgggacagggaactggccacactagtcactagtggggaccctgtgggctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctggggatgggacagggaactggccacactagtcactagtggggaccctgtgggctgc 320

                                                                       
Query: 121 caaaccagggccacaattctagttctggccacaattccagttcgtctggctgcctttggt 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaccagggccacgattctagttctggccacaattccagttcgtctggctgcctttggt 380

                                                                       
Query: 181 gtctgcccctcattcccgcctgctcagctgcccctcgtaggcctccctgccgccgccgct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 gtctgcccctcattcccgcctgctcagctgcccctcgtaggcctccctgctgccgccgct 440

                                                                       
Query: 241 tcttgctgcttctccttccaaagggcgctgtgtcttcaagcccctgcggtaagttatcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tcttgctgcttctccttccaaagggcgctgtgtcttcaagcccctgcgggaagttatcca 500

                                              
Query: 301 gctctgcagggccttcctggctctgtgtgtgtgtg 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 gctctgcagggccttcctggctctgtgtgtgtgtg 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)