BAC Information

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BAC

Clone NameMSMg01-155B24
Chromosome15 (Build37)
Map Location 84,500,653 - 84,652,131
singlet/doubletdoublet
Overlap geneArhgap8, 3110043J09Rik, Phf21b
Upstream geneScube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l
Downstream geneLOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155B24.T7 (MSMg01no155_b24.b1)MSMg01-155B24.TJ (MSMg01no155_b24.g1)
ACCAG356228AG356229
length802726
length of high quality
(start - end)
369 (44 - 412)533 (74 - 606)
definitionCHROMAT_FILE: MSMg01no155_b24.b1 PHD_FILE: MSMg01no155_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:58 2005CHROMAT_FILE: MSMg01no155_b24.g1 PHD_FILE: MSMg01no155_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,500,653 - 84,501,014)(84,652,008 - 84,652,131)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTGGGTCGGATGGAAGTGTCTCTGAGGTTGTCAAGTTCCCTGGGGA
AAATCTGTGGTCCCTGGAGCTGCCGCCACAACATCTGGGGATGGGACAGG
GAACTGGCCACACTAGTCACTAGTGGGGACCCTGTGGGCTGCCAAACCAG
GGCCACAATTCTAGTTCTGGCCACAATTCCAGTTCGTCTGGCTGCCTTTG
GTGTCTGCCCCTCATTCCCGCCTGCTCAGCTGCCCCTCGTAGGCCTCCCT
GCCGCCGCCGCTTCTTGCTGCTTCTCCTTCCAAAGGGCGCTGTGTCTTCA
AGCCCCTGCGGGAAGTTATCCAGCTCTGCAGGGCCTTCCTGGCTCTGTGT
GTGTGTGTGCCCCCCCCCCCACACCGCCTATCTCCCCTGCCCACTTCGAC
TCCTTTACCCCCCCCTCCTTTCCTCTCCCCCTCTTTCTCTCCCCCCTTCT
CCCCCTCCCCACCCCCCCACTCTCCATTCCCCCTTACCCCTCTTACCCTT
CCCCCCCCCCACCTCCTCTCCTCCCCCCCTCCCACCTACCCACCTCATAT
CCTTACCTTTCCCATCTTCCCCCCCCCACTTTTCCCCCATCCCTCTTTCC
CCCTCCTTCTATCCTCACCCTCACTCTTCCACGCTCTCGCCTTACCCTCT
CTTTTCTCTACCTTCTTATCCCTTTCCCTCCCCACCCCTACCTCTTTTTC
CCTCCCCTCCTCTCTCCCACCCCCCATATTTACACCCAGTTCACTCTCTC
CN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTGATTGATGTAGGAAGGCTCAGCC
CCACTGTTGGTGATGTCATCCCTGCGTAGGTGGTCCTCGGTGGTGTAAGA
AATAGCTGAATGTGAGCCTGGAACAGCATTCCTGCATGATACCCTTGCTT
TTAATGGCTTTGCAGTATTCCATTGTGTAAATGAACCACATTTTCTTTAC
CCATTCTTCAACTGAGGGACATCTAGGTTGTTTCCAGTTTTTGGCTATTA
CAAATAAAGCTGCTATGAACATAGTTGAGCAAGCGTCCTTGTGGGATGGT
GGAGCATCTTTTGGGTGTAAGGCCAGGAGTGGTATAGCTAGGCCTTGAGG
TAGAACTATTTCCAATTTTCTGAGAAACCACCAGATTGATTTCCAGAGTG
GTTCACATTCCCAGCAGCAGTGGAGAGGTTGTTTCCTGCTGGCTTTGTCC
ATTGGTATGACAGCTTTCTGCCAAGTCTGTCATGTTTTCCTTCTGTAGAG
CGTATATAAGATGCTGTGATTCTTAATAAACTTGCTCAGCCTAAGACACA
GCTTGTGTAAGAGTTCCTGATCCCAGCTTCACTATCTTTATTTTCTGATC
CCCTGGCTCTTCTCTCTGGAACCTGTCACTGAAGAACACCTTGCTGGGCC
AGGTCAGTGCCTGCCTGCTAAGTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_b24.b1 MSMg01no155_b24.b1 CHROMAT_FILE:
MSMg01no155_b24.b1 PHD_FILE: MSMg01no155_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:58 2005
         (369 letters)



>mm_chr15_84500449_84501217
          Length = 769

 Score =  677 bits (350), Expect = 0.0
 Identities = 359/362 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgggtcggatggaagtgtctctgaggttgtcaagttccctggggaaaatctg 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgggccggatggaagtgtctctgaggttgtcaagttccctggggaaaatctg 264

                                                                       
Query: 65  tggtccctggagctgccgccacaacatctggggatgggacagggaactggccacactagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggtccctggagctgccgccacaacatctggggatgggacagggaactggccacactagt 324

                                                                       
Query: 125 cactagtggggaccctgtgggctgccaaaccagggccacaattctagttctggccacaat 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 cactagtggggaccctgtgggctgccaaaccagggccacgattctagttctggccacaat 384

                                                                       
Query: 185 tccagttcgtctggctgcctttggtgtctgcccctcattcccgcctgctcagctgcccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccagttcgtctggctgcctttggtgtctgcccctcattcccgcctgctcagctgcccct 444

                                                                       
Query: 245 cgtaggcctccctgccgccgccgcttcttgctgcttctccttccaaagggcgctgtgtct 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgtaggcctccctgctgccgccgcttcttgctgcttctccttccaaagggcgctgtgtct 504

                                                                       
Query: 305 tcaagcccctgcgggaagttatccagctctgcagggccttcctggctctgtgtgtgtgtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaagcccctgcgggaagttatccagctctgcagggccttcctggctctgtgtgtgtgtg 564

             
Query: 365 tg 366
           ||
Sbjct: 565 tg 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_b24.g1 MSMg01no155_b24.g1 CHROMAT_FILE:
MSMg01no155_b24.g1 PHD_FILE: MSMg01no155_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:58 2005
         (533 letters)



>mm_chr15_84651391_84652323
          Length = 933

 Score =  201 bits (104), Expect = 9e-56
 Identities = 119/124 (95%)
 Strand = Plus / Minus

                                                                       
Query: 410 ttcctgctggctttgtccattggtatgacagctttctgccaagtctgtcatgttttcctt 469
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 741 ttcctgctggctttgtccattggtatgacagctttctgccgagtctgtcatgttttcctt 682

                                                                       
Query: 470 ctgtagagcgtatataagatgctgtgattcttaataaacttgctcagcctaagacacagc 529
           ||| |||| |||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgcagagtgtatataagatgctgcaattcttaataaacttgctcagcctaagacacagc 622

               
Query: 530 ttgt 533
           ||||
Sbjct: 621 ttgt 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)