BAC Information

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BAC

Clone NameMSMg01-155E07
Chromosome15 (Build37)
Map Location 62,947,407 - 62,947,670
singlet/doubletsinglet
Overlap genenone
Upstream genePvt1, LOC100040584, H2afy3, LOC100040430, Tsg101-ps
Downstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155E07.T7 (MSMg01no155_e07.b1)MSMg01-155E07.TJ (MSMg01no155_e07.g1)
ACCAG356326AG356327
length738744
length of high quality
(start - end)
429 (43 - 471)268 (74 - 341)
definitionCHROMAT_FILE: MSMg01no155_e07.b1 PHD_FILE: MSMg01no155_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:08 2005CHROMAT_FILE: MSMg01no155_e07.g1 PHD_FILE: MSMg01no155_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGATCCGCGGA
ATTCCTGATCTTTCCCGAACTTTTATCATGAATGGGTGTTGGATCTTGTG
TGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTT
TCTGCAAGGCAAAAGACACTGTCAATAAGACAAAGAGACCACCAACAGAT
TGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAA
CATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAACAACCCCA
TTAAAAAATGGGGCTCAGAACTGAACAAAGAATTCTCACCTGAGGAATAC
CGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAG
GGAAATGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAA
TGTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGA
GAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACC
ACTCTGGAAATCCGTCTGTTGGTTCCTCTTAATATTGCACATAGCACTAC
CGGTAGATCCAGCTATACCTCCCCTGCCTTTATTTTCATACCACGCCCCT
ACCTTCCAATATTTACACCCGCCCCCCCTATGTTTTTCACTCCCCTTTTT
TCATCCCCCCTTAACCTGTTTAGTAACCCCCTATGTTC
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGGCAACAGTGCTTGAGAACTTTGAA
ACTCCACATTCTCTTCAACCCTTTCCATGGCTCAAATATCTTCCTTACTG
CACTAGAAGGTACAGGGTACCTTTTTGACTGCATCGTATGCAGACCATAC
TTGAGGCAAGTAAATCATCACATGGGACTTTTTTTCTTAAGATCTGAATC
TGCTTCTTCTGCTATTTCTAACAGACCAATAATTAGAGTCTTACCACTTC
CACCTTGAGGAATTATTGTTTCTAATTTAGGGGAAAGGGACGATTCATGA
TGGTGTTTCAGGACCAGTTACATATATTTGTAACTGTTAAACCTAACATG
CTGACAATGGATCTCCGAGGCTACTGGACCAATGTACATGAAACCCGAGG
CTAGATCCTGCCTAGTCCACCGATCATCATGATCCATTCGACTCTTGATT
CCATTATTATTCACATGCCTGACCCTTATTGTATCTTATTCCCACCGCTT
TCCAGTGCCCATATTCCCCTTGTATCTCCTTTTTATTCACCCCCATCTCC
CTTTGCTTTCGCTTTTCCCTTTGTAACCATTTACCCTTTCCCTGTCGCCC
TTTATCGTTTTTCGCTTTTCCCCCTTTTTTACCTTTCCCTTTTTTCTTTT
TTCCCACCTTTTTCATTTACCTCGCACTTCCCGCCATTTAACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_e07.g1 MSMg01no155_e07.g1 CHROMAT_FILE:
MSMg01no155_e07.g1 PHD_FILE: MSMg01no155_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:08 2005
         (268 letters)



>mm_chr15_62947207_62947871
          Length = 665

 Score =  470 bits (243), Expect = e-137
 Identities = 261/267 (97%), Gaps = 3/267 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggcaacagtgcttgagaactttgaaactccacattctcttcaaccctttccatggctc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 464 tgggcaacagtgcttgagaactttgaaactcc-cattctcttcaaccctttccatggctc 406

                                                                       
Query: 61  aaatatcttccttactgcactagaaggtacagggtacctttttgactgcatcgtatgcag 120
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 405 aaatatcttccttactgcactagaaggtacagggtacc-ttttgcctgcatcgtatgcag 347

                                                                       
Query: 121 accatacttgaggcaagtaaatcatcacatgggactttttttcttaagatctgaatctgc 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 346 accatacttgaggcaagtaaatcatcacatggg-ctttttttcttaagatctgaatccgc 288

                                                                       
Query: 181 ttcttctgctatttctaacagaccaataattagagtcttaccacttccaccttgaggaat 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttcttctcctatttctaacagaccaataattagagtcttaccacttccaccttgaggaat 228

                                      
Query: 241 tattgtttctaatttaggggaaaggga 267
           |||||||||||||||||||||||||||
Sbjct: 227 tattgtttctaatttaggggaaaggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 665
Length adjustment: 9
Effective length of query: 259
Effective length of database: 656
Effective search space:   169904
Effective search space used:   169904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)