BAC Information

Click to search

BAC

Clone NameMSMg01-155F08
Chromosome15 (Build37)
Map Location 92,113,901 - 92,114,444
singlet/doubletsinglet
Overlap geneCntn1
Upstream geneSlc2a13, Lrrk2, Muc19, Smgc, LOC100042529
Downstream genePdzrn4, LOC100042552, LOC100043283, Glt8d3, Yaf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155F08.T7 (MSMg01no155_f08.b1)MSMg01-155F08.TJ (MSMg01no155_f08.g1)
ACCAG356369AG356370
length751748
length of high quality
(start - end)
536 (46 - 581)492 (77 - 568)
definitionCHROMAT_FILE: MSMg01no155_f08.b1 PHD_FILE: MSMg01no155_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:13 2005CHROMAT_FILE: MSMg01no155_f08.g1 PHD_FILE: MSMg01no155_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAAGTGAAAGATCTGTATGA
TAAAAACTTCAAATCTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGAT
GGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATG
GCTCTCTTGCCAAAAGCAATCTACAGATTCCATGCAATCCCCATCCAAAT
TCCCACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCT
GGAATAACAAAAAACCTACGATAGCAAAAAGTCTTCTCAAGGATAAAAGA
ACTTCTGGCGGAATCACCATGCCCGGACCTACAGCTTTACTACCGAGCCA
T
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGACTTTTGGAGTGCTAGGTT
GGTACTCCAGGAACACTAAGATGTTCCATGGCTACTCTCAAGTGAGGTCC
AATGACCTTTGAAATGTGTGGATGGTGCTCCAGGAGTAACCTGAGAAATG
TTCACCAATGTCCACTCCTGTCTATAGGTTGTCCTGGGCCACAGTATGAC
TACTGCTGACAGAGATCACCAGGCAGTTAGCAACTGAGGTGATTTATTAC
TTGGGATTTATGCTCAAATGACCTGTGAGAATACAATGTGCAGTAAATCT
CATAATGAAAAAGCATGGAGACAGGGAGGAGTCTGAGAACTATGTCTTAC
TGTTTTGTTCTAACAGGAAGCCCCAACCAAAAGTAAACTTGGCATTGGTG
GGACCCATGTGTCACTTTGAGAGAGAACGGAGGGCGTCAGCTGTAAAAAG
AATGATTTGTAGACACTCAGAGAACTTCAAGAATCTGTTGTCAGGCCTGT
TAAAATCCTTCTTCTCCTCAGAGCAGATTCACTTTATCCCAGTAATAGTT
ATAAGGGTTACAGGACCCAGGGCGTTAAGCCTACCACTTTAGCTCTCAAC
ACTGGTAAGCAGGTTAAAACCTTGTGCAAGTTTCCTCCCTGTCTTTGTGT
AACGGGACATATGCTTATTTTCCCAGGCCCCTATAGGAGGGTATGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_f08.g1 MSMg01no155_f08.g1 CHROMAT_FILE:
MSMg01no155_f08.g1 PHD_FILE: MSMg01no155_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:13 2005
         (492 letters)



>mm_chr15_92113883_92114774
          Length = 892

 Score =  723 bits (374), Expect = 0.0
 Identities = 479/544 (88%), Gaps = 52/544 (9%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgacttttggagtgctaggttggtactccaggaacactaagat-gt--tccatggct 57
           ||||||||||||||||||||||||||| | |||||||||||||||| ||  ||||||| |
Sbjct: 562 cagtgacttttggagtgctaggttggtccaccaggaacactaagatggtgctccatggtt 503

                                                                       
Query: 58  actctcaagtgaggtccaatgacctttgaa--------at-gtg-----tgg-------- 95
           |||||||||||||||||||||| |||||||        || |||     |||        
Sbjct: 502 actctcaagtgaggtccaatgatctttgaaacacaaggatggtgctccatggctactctc 443

                                                                       
Query: 96  ------------atggtgctccaggagtaacctgagaaatgttcaccaatgtccactcct 143
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atgtgaattccaatggtgctccaggagtaacctgagaaatgttcaccaatgtccactcct 383

                                                                       
Query: 144 gtctataggttgtcctgggccacagtatgactactgctgacagagatcaccaggcagtta 203
           |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||
Sbjct: 382 gtctataggttgtcctgggccacagtgtgactactgctgacagagagcaccaggtagtta 323

                                                                       
Query: 204 gcaactgaggtgatttatt---------------acttgggatttatgctcaaatgacct 248
           |||||||||||||||||||               ||||||||||||||||||||||||| 
Sbjct: 322 gcaactgaggtgatttatttcttgggaaacaggaacttgggatttatgctcaaatgaccc 263

                                                                       
Query: 249 gtgagaatacaatgtgcagtaaatctcataatgaaaaagcatggagacagggaggagtct 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtgagaatacaatgtgcagtaaatctcataatgaaaaagcatggagacagggaggagtct 203

                                                                       
Query: 309 gagaactatgtcttactgttttgttctaacaggaagccccaaccaaaagtaaacttggca 368
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gagaactatgtcttactgttctgttctaacaggaagccccaaccaaaagtaaacttggca 143

                                                                       
Query: 369 ttggtgggacccatgtgtcactttgagagagaacggagggcgtcagctgtaaaaagaatg 428
           ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 142 ttggtgggacccatgcgtcactttgagagagaatggagggcgtcagctgtaaaaaggatg 83

                                                                       
Query: 429 atttgtagacactcagagaacttcaagaatctgttgtcaggcctgttaaaatccttcttc 488
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  atctgtagacactcagagaacttcaagaatctgttgtcaggcctgttaaaatccttcttc 23

               
Query: 489 tcct 492
           ||||
Sbjct: 22  tcct 19


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)