BAC Information

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BAC

Clone NameMSMg01-155I15
Chromosome15 (Build37)
Map Location 10,820,783 - 10,821,160
singlet/doubletsinglet
Overlap genenone
Upstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
Downstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772, Npr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155I15.T7 (MSMg01no155_i15.b1)MSMg01-155I15.TJ (MSMg01no155_i15.g1)
ACCAG356517AG356518
length761737
length of high quality
(start - end)
471 (44 - 514)378 (76 - 453)
definitionCHROMAT_FILE: MSMg01no155_i15.b1 PHD_FILE: MSMg01no155_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:28 2005CHROMAT_FILE: MSMg01no155_i15.g1 PHD_FILE: MSMg01no155_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGTTTCTCT
GGAGTCTAACATCTTGAGTTCTTTGTATATATTGGATATTAGCCCTCTAT
CTGATGTAGGATTGGTAAAGATCTTTTCCCAATCTATTGGTTGCCTTTTT
GTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAG
GTCCCATTTGTCAATTCTTGATCTTACAGCAAAAGCTGTTGCTATTCTGT
TCAGGAATTTTCCCCCTGTGCCCATATGTTTGAGGCTCTTCCTCACTTTC
TCCTCTATAAGTTTCAGTGTATCTGGTTTAATGTGGAGGTTTTTGATCCA
CTTGGACTTGTGCATTGCACAAGGAGATAAGACTGGATCGATTTGCATTC
ATCTACATGCTAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTG
TCTTTTTTTCCAGTGGATGGTTTTAGCTCCTTTGTCACACATTAAGTGAC
CTTTTTGTGCTTGCGCTTATTTTCGGCCCTTTTATTTTATCCCTATTGCT
CCTACCTGTTTTGTCCTTGTACCTTTTACCCTGCCGTTTTTTTTTTACCC
TCTCTTTTCTCTCCTCCCTTTTTTTTTTTCCCCCCTTTTCCCGTTTTTTT
TCTTTTTCCCCTTTTTTTACTTTCCCTTTTTTTCCTCTTTTTGCCTTTCC
CCCTTCTTTTT
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGACTCACTGAAGTTGGGTTGTGA
GAAATAAGCCATTAGCTGGAGAGAGGAGGCAGGGAGCAGGAGTTAGAAAG
ATTTGCTGTGACACAGATGCCACCAGTGTGTGGCTCTTCACTGTCCAAAA
GGGTTGGTGGTCACTCTGACTGCTTCTCCTGAGAGCACCCAGAGCCAAGC
AGCCTGCTCTGGGGACTGGCTCTCCATTTGTTTTCTCTGGTTATCCCAGT
TCTCATCAGCAAGATCCTTTTCTCTGGGTGGAGGCCCTACCTTACGAGAG
GAGCTGGCCTGGCTTGCTGCCCCTGGGACCAGGCTTGGCTAAAAGCAACC
GTGCCTGTCAAATACCTATCTGCTATCAGCACGCCCTTCCATTGCCGTGA
GGAATATGAACTGGAACATACTTTTCAAAGCTTATATATTTTTCTTGCGG
TTCTTCAGCCTCAGCAACTCCTCTTCCAAAGAATTCATGACGCATACACA
GTTCTTGTCCCTACTTATTCATCTTATCCTCTCTGCCGCTTGCACTGTTT
TTTCTCTTTTTCCTTTTTGACACGTTTCGGATTCCTTGCCTCGTTTTCCT
TTTTACGCATTTACCCTTTTTTACGTTCCCCTTTTTCCTTTTTCCCACCC
GTTTTCCTTTTGCTGTCCCCTGTCCTTCCTTTATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_i15.g1 MSMg01no155_i15.g1 CHROMAT_FILE:
MSMg01no155_i15.g1 PHD_FILE: MSMg01no155_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:28 2005
         (378 letters)



>mm_chr15_10820583_10821360
          Length = 778

 Score =  716 bits (370), Expect = 0.0
 Identities = 376/378 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgactcactgaagttgggttgtgagaaataagccattagctggagagaggaggcaggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgactcactgaagttgggttgtgagaaataagccattagctggagagaggaggcaggga 260

                                                                       
Query: 61  gcaggagttagaaagatttgctgtgacacagatgccaccagtgtgtggctcttcactgtc 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gcaggagttagaaagatttgctgtgacagagatgccaccagtgtgtggctcttcactgtc 320

                                                                       
Query: 121 caaaagggttggtggtcactctgactgcttctcctgagagcacccagagccaagcagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaagggttggtggtcactctgactgcttctcctgagagcacccagagccaagcagcct 380

                                                                       
Query: 181 gctctggggactggctctccatttgttttctctggttatcccagttctcatcagcaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctctggggactggctctccatttgttttctctggttatcccagttctcatcagcaagat 440

                                                                       
Query: 241 ccttttctctgggtggaggccctaccttacgagaggagctggcctggcttgctgcccctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttttctctgggtggaggccctaccttacgagaggagctggcctggcttgctgcccctg 500

                                                                       
Query: 301 ggaccaggcttggctaaaagcaaccgtgcctgtcaaatacctatctgctatcagcacgcc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ggaccaggcttggctaaaagcaaccgtgcctgtcaaatacctatctgctatcggcacgcc 560

                             
Query: 361 cttccattgccgtgagga 378
           ||||||||||||||||||
Sbjct: 561 cttccattgccgtgagga 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)