BAC Information

Click to search

BAC

Clone NameMSMg01-155I16
Chromosome15 (Build37)
Map Location 102,183,248 - 102,183,688
singlet/doubletsinglet
Overlap genenone
Upstream geneKrt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas
Downstream geneSp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155I16.T7 (MSMg01no155_i16.b1)MSMg01-155I16.TJ (MSMg01no155_i16.g1)
ACCAG356519AG356520
length746726
length of high quality
(start - end)		441 (70 - 510)477 (75 - 551)
definitionCHROMAT_FILE: MSMg01no155_i16.b1 PHD_FILE: MSMg01no155_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:28 2005CHROMAT_FILE: MSMg01no155_i16.g1 PHD_FILE: MSMg01no155_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAATCCGCGG
AATTCAGAGCTATCCCGGACTAACATAGGAAGCTACAGGCCAGTCAGGGA
TATATAGTGAGATGGTGTCTCAAAAACAAACAAACAAGCACAAACCACAC
TATGTCTAGAGACACAAATTCAGGGACATCCTCTGAAGCATAGTTCACAC
TATGTCTCAGCTACATAAGATCTTGTCTTTAAAAAGAAATGTGGAAGATG
GACCTAAAACTGGAGCGTAAAGAATGGGAGGTGTGGCAATTATGCACTTG
ATTAATTTTAGTTTTGTATTTTTGAGACAGGCTGAGGGTGACTTCTAATT
TGCCGGAATCCTCCTGCCTCATCTCCTGAGTGCTGAGAATTACAAACAGT
GGTGAATAGTTAACCTCCACTGTCATTCATCTGGTACACAGCGAACCTGA
GAGACTAGGCCTGTCTGAAAAAAAGAAAAAAGAAAAGAAAGGGAAAGAGA
GAGAGAGAGAGAGATACATATACCCCTCCTCTTACCTTACCCCTTTTATC
TTCTCCCCTCCCCCACCCCCATATTATATACCCTTTCTTTCCCCTCCTTC
CCTTTCCCCCTTTTCCTTTTCCCTTTTTTCCCTCATTTTCCTCCCATTCC
TCCCCCCCTCTCATTTTTCCTTTCCCCTCTTCCCTTTTCCCTCCTTATTT
TTACCCCCATTACCCCCCACCCCCTCTCCTCTTTTTTACCCCCTTA

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGCCTGGCAGGGTTACACAGGGAG
ACCCTGTCTCAAATATAAACACACATCTAAGAGATGGCTGTCAATAAAGC
ACTCACCACAAGAGCATGAATAGCAGAGTTAAAACTTCTCAGTATACTGG
AGATCCATCCGCCTGCCTCTGCCTCCACTGTGGTAGGATTAACGATGCTT
TGGGGCCACCAGCACCTGGCTTCTATTTTGTTTGTTCTTTATTTAGGATT
TGCAAGACAGAGTTTCTCTGTGGAACCTTTGAACTAGTTTTTTAGACCAA
GTAGGCCTCAAACTCCTAGGTAGTCCTAATTCTCCTTCCAAAGTGCTGGG
ATTAAAGGTGTGTGCCACGCCAGGCAGTGGTGGCGCATGCCTTTAATGCC
AGCACTTGGGTGGAAAAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTG
GTCTACAGAGCAAATTCCAGGACAGCCAGGGGCAACACCCTGTCTAGGAA
AACAAAACAAAACTAACAAATCACCAAAAAAATTGAAGGCGTGTGCCATC
ATGTTTGTGCGTCTCACAACAAGGTGGAAGACCAATCAACCTAATACCCA
CAGTCCTCTTCCATGTGTACTGTGACACATGCACACACCTGCCTTCATAT
GCAGTTCTTTACCTGGTTGTTCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_i16.b1 MSMg01no155_i16.b1 CHROMAT_FILE:
MSMg01no155_i16.b1 PHD_FILE: MSMg01no155_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:28 2005
         (441 letters)



>mm_chr15_102183048_102183888
          Length = 841

 Score =  837 bits (433), Expect = 0.0
 Identities = 439/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaacataggaagctacaggccagtcagggatatatagtgagatggtgtctcaaaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaacataggaagctacaggccagtcagggatatatagtgagatggtgtctcaaaaacaa 260

                                                                       
Query: 61  acaaacaagcacaaaccacactatgtctagagacacaaattcagggacatcctctgaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaacaagcacaaaccacactatgtctagagacacaaattcagggacatcctctgaagc 320

                                                                       
Query: 121 atagttcacactatgtctcagctacataagatcttgtctttaaaaagaaatgtggaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagttcacactatgtctcagctacataagatcttgtctttaaaaagaaatgtggaagat 380

                                                                       
Query: 181 ggacctaaaactggagcgtaaagaatgggaggtgtggcaattatgcacttgattaatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacctaaaactggagcgtaaagaatgggaggtgtggcaattatgcacttgattaatttt 440

                                                                       
Query: 241 agttttgtatttttgagacaggctgagggtgacttctaatttgccggaatcctcctgcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttttgtatttttgagacaggctgagggtgacttctaatttgccggaatcctcctgcct 500

                                                                       
Query: 301 catctcctgagtgctgagaattacaaacagtggtgaatagttaacctccactgtcattca 360
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 501 catctcctgagtgctgagaattacaaacagtggtgaatagttaacctcgattgtcattca 560

                                                                       
Query: 361 tctggtacacagcgaacctgagagactaggcctgtctgaaaaaaagaaaaaagaaaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctggtacacagcgaacctgagagactaggcctgtctgaaaaaaagaaaaaagaaaagaa 620

                                
Query: 421 agggaaagagagagagagaga 441
           |||||||||||||||||||||
Sbjct: 621 agggaaagagagagagagaga 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |