BAC Information

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BAC

Clone NameMSMg01-155J07
Chromosome15 (Build37)
Map Location 96,452,946 - 96,542,615
singlet/doubletdoublet
Overlap geneSlc38a1, Slc38a2
Upstream geneDbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip
Downstream geneLOC667941, LOC546651, Slc38a4, Amigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155J07.T7 (MSMg01no155_j07.b1)MSMg01-155J07.TJ (MSMg01no155_j07.g1)
ACCAG356549AG356550
length730733
length of high quality
(start - end)
547 (45 - 591)505 (77 - 581)
definitionCHROMAT_FILE: MSMg01no155_j07.b1 PHD_FILE: MSMg01no155_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:31 2005CHROMAT_FILE: MSMg01no155_j07.g1 PHD_FILE: MSMg01no155_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,542,073 - 96,542,615)(96,452,946 - 96,453,450)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTATCACATTCTAGTAAGATGGAGCCGACGAATTGCGTTAGCTCA
TCTTTTCAACAAGAACCGCTGAGCCCCATAAATCCTATCACTTCAGGACA
GACAACCGTGATGAGCAGCGGGACAACGTGTGGAGCAGGAAGTATGCCTG
CCGTTCATGGTACTTAATCAGAAGGCCCGTGGACGGGTCACGAAAATTCT
GTGGTAATAACTTCCAAAGGTGCCAGCCCACAAGAAAAGCTTCTAACCCA
GCCGAGATCAGTCAGGAAAAGAAGCTTTGAGAAAGAAAGAGAAGAAGGAG
CAGATGTATCCGCCTACTCATATAGATACGAATCTATCTCATATGCATGT
GCCTCTTGGAATATTTCCTTCTGGTTGGCATGACATCACTGACCCTTTCA
AGGGTGCTCACTTCTTTAGTACGCATCAATCAATATAAATTTACCGAATG
ACAAAAGTCCCAGAGCCTCGTTTCCCTGGATTGTTCTCCTTGTGCTAGAA
GCTGGAGTTACAGTTATTTTCTCCCTGGAGAAAATAAGTTCCTCGGTCAG
GCACTTCAATAAACTTCTACATAAGAAAAATGTACCACTGCTCTAACGCA
TGACTTCTTCAACAGCTCTTGTTAAATTGTGTGGCTTTCTATCCAAATTA
AACTTACATGCCTCTCTAAAATGGACTTCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAGCTCCCATGTTAGGAGGCTCA
CAACATGTTAGGAGGAACACCTGCTCCTAGAAACCTGATGCCCTCTTCTG
GTCTCCACGGGCAACTGCACCCACATGCACACACTCCCACACGGATACTC
TTGCATACATAATTAAAAAGAAAGAAATGGAAGCTACTATTAATTATCAC
TCAACAAGGTGGAGGGAGTGTTTAAAAGATTCCAATAAAAAGCAGTATCG
CCCAACACCGTGAACACACTGGGACACGAGGAAGGGTCTACATTAGGGGC
TTAGCAGTCACTACAGGAAGGGGAAAGGAGCTGAGAATGACCACACCAAG
GTGCATACTCCAGACTGTCAGGAATGGTTTCTACAAAGATGTCTGCTTGT
GGCTGTGCCTTTATCCTCTGCATCCCTGTCTCCTTGGGGCCTTAACAAAG
TGTAGCACGATGGCATGTTAATAAGCAGTCCCCCAGGGCTGATGAGATGA
CTCAGCGGGAAAAGGCGCTTGTCACCAAACCTGACCACTGAGTGGGATCC
CTGGAATCCACCTACTGGAAAGAAGGAACCAACTGCCGAAGGTTCTGACC
TTTACACTCTTAACATGACCCCTCCCTCTACCCCCACATATAAGCATGCA
TGCATGACACACACACACACACACCCACACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_j07.b1 MSMg01no155_j07.b1 CHROMAT_FILE:
MSMg01no155_j07.b1 PHD_FILE: MSMg01no155_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:31 2005
         (547 letters)



>mm_chr15_96541869_96542815
          Length = 947

 Score = 1004 bits (519), Expect = 0.0
 Identities = 537/543 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtatcacattctagtaagatggagccgacgaattgcgttagctcatcttttca 64
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 747 gaattctgtatcacattctagtaagatggagccgacgaattgtgttagctcatcttttca 688

                                                                       
Query: 65  acaagaaccgctgagccccataaatcctatcacttcaggacagacaaccgtgatgagcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 acaagaaccgctgagccccataaatcctatcacttcaggacagacaaccgtgatgagcag 628

                                                                       
Query: 125 cgggacaacgtgtggagcaggaagtatgcctgccgttcatggtacttaatcagaaggccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cgggacaacgtgtggagcaggaagtatgcctgccgttcatggtacttaatcagaaggccc 568

                                                                       
Query: 185 gtggacgggtcacgaaaattctgtggtaataacttccaaaggtgccagcccacaagaaaa 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 567 gtggatgggtcacgaaaattctgtggtaataacttccaaaggtgccagcacacaagaaaa 508

                                                                       
Query: 245 gcttctaacccagccgagatcagtcaggaaaagaagctttgagaaagaaagagaagaagg 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 507 gcttctaacccagccgagatcagtcaggaaaagaagcttcgagaaagaaagagaagaagg 448

                                                                       
Query: 305 agcagatgtatccgcctactcatatagatacgaatctatctcatatgcatgtgcctcttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agcagatgtatccgcctactcatatagatacgaatctatctcatatgcatgtgcctcttg 388

                                                                       
Query: 365 gaatatttccttctggttggcatgacatcactgaccctttcaagggtgctcacttcttta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaatatttccttctggttggcatgacatcactgaccctttcaagggtgctcacttcttta 328

                                                                       
Query: 425 gtacgcatcaatcaatataaatttaccgaatgacaaaagtcccagagcctcgtttccctg 484
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 327 gtacgcatcaatcaatataaatttaccgaatgacaaaagtccaagagcctcgttttcctg 268

                                                                       
Query: 485 gattgttctccttgtgctagaagctggagttacagttattttctccctggagaaaataag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gattgttctccttgtgctagaagctggagttacagttattttctccctggagaaaataag 208

              
Query: 545 ttc 547
           |||
Sbjct: 207 ttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_j07.g1 MSMg01no155_j07.g1 CHROMAT_FILE:
MSMg01no155_j07.g1 PHD_FILE: MSMg01no155_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:31 2005
         (505 letters)



>mm_chr15_96452746_96453650
          Length = 905

 Score =  915 bits (473), Expect = 0.0
 Identities = 497/505 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagctcccatgttaggaggctcacaacatgttaggaggaacacctgctcctagaaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagctcccatgttaggaggctcacaacatgttaggaggaacacctgctcctagaaacct 260

                                                                       
Query: 61  gatgccctcttctggtctccacgggcaactgcacccacatgcacacactcccacacggat 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gatgccctcttctggtctccacgggcaactgcacccacatgcatacactcccacacggat 320

                                                                       
Query: 121 actcttgcatacataattaaaaagaaagaaatggaagctactattaattatcactcaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcttgcatacataattaaaaagaaagaaatggaagctactattaattatcactcaaca 380

                                                                       
Query: 181 aggtggagggagtgtttaaaagattccaataaaaagcagtatcgcccaacaccgtgaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtggagggagtgtttaaaagattccaataaaaagcagtatcgcccaacaccgtgaaca 440

                                                                       
Query: 241 cactgggacacgaggaagggtctacattaggggcttagcagtcactacaggaaggggaaa 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactgggacacgaggcagggtctacattaggggcttagcagtcactacaggaaggggaaa 500

                                                                       
Query: 301 ggagctgagaatgaccacaccaaggtgcatactccagactgtcaggaatggtttctacaa 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggagctgagaatgaccacaccgaggtgcatactccagactgtcaggaatggtttctacaa 560

                                                                       
Query: 361 agatgtctgcttgtggctgtgcctttatcctctgcatccctgtctccttggggccttaac 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatgtccgcttgtggctgtgcctttatcctctgcatccctgtctccttggggccttaac 620

                                                                       
Query: 421 aaagtgtagcacgatggcatgttaataagcagtcccccagggctgatgagatgactcagc 480
           |||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 621 aaagcgtagcacgatggcatgttaataagcagtcccacaggggtgatgagatgactcagc 680

                                    
Query: 481 gggaaaaggcgcttgtcaccaaacc 505
            ||||||||||||||||||||||||
Sbjct: 681 cggaaaaggcgcttgtcaccaaacc 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)