BAC Information

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BAC

Clone NameMSMg01-156P22
Chromosome15 (Build37)
Map Location 85,219,209 - 85,219,498
singlet/doubletsinglet
Overlap geneAtxn10
Upstream gene1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1
Downstream geneEG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156P22.T7 (MSMg01no156_p22.b1)MSMg01-156P22.TJ (MSMg01no156_p22.g1)
ACCAG357591AG357592
length746755
length of high quality
(start - end)
108 (45 - 152)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no156_p22.b1 PHD_FILE: MSMg01no156_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:15 2005CHROMAT_FILE: MSMg01no156_p22.g1 PHD_FILE: MSMg01no156_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGGAGCAAGCTGGCTAGCCAGAGAGTTGGACTATGGAGCTGTGGC
TTGAAGTGAGAGATTCTACCTCAACGTAAGCAGCGGGGGGGGGGGGGGGA
ATCAATTCCACATCAACTTCTTGCCAAGGAATGCATGCAGGCAGCCTACA
TATGACACCCCTCTCACTACACACCAAACATAACATGCACATACACATAT
CCTACACACCATGCACACACATACACATATCCTACACACCATGCACACAC
TTACCCCCTACTTAACACACACACTGACTCACTATCCACCTAACATAAAA
GGCACATACCCTTTCCCTACTTCCCCAAACAATCCCCCTACACACACCTA
TGTACACACCCTACTTCCCCCCCCCAAACAAAAAAAAAAACACCCTCTGT
TGGGGCCGCACTTTCTCTTACACACACATACACTTCCTGCTTTGCTGCAA
AGGGACTGCCAAGCCTGTGCATCTACTCAGCCTGCCTGGCTCCCATTACC
TGTTGCCTCTAACCGAAACGCTCTTCCCCCCAGCTGTGTGTTACTTTTGG
CCAATTCTCCCCGCTTCCATGGTAACAAAAGCCTCACGGCTTTTAGAACT
TGCCACTTACTCGCTCTTCCCAAGGATTCACCAGTCCTGGCCTTCACACC
CAATGCTCAAATGCGGGAAACAAAGGAATAANTTTTGTCCTGTTAN
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGCCAGTTGGTTATTGTCTTGA
TTGCCTTCAGGTAGACATGAGTTCTCTTCCTGTAAAAGAAAAGAGGACAT
CTCAGCACTGATTTACCTTTCTGGGGACAATTGTTTTTGTTCCCAGCAGG
GGGAGCAGTGAGGTGTGGTTGAAAAACATTTAAAACTTAATTTTCTAGGA
AACATAAAAAAAAATCCTTCAATATTTGTTAAATCACATCTGACTTTAAA
TTGTTCACAAGACTTGTGTTTAAAGTAATTTTAGTCTTATAGTGGGATAC
GCCTGCTCTCTCTCTCTCTTTCTCTCTCCCCCCCCCTCTCTCTGTACACG
TGTGCAGGAGTGTGTGCATGTGCCCGCGCGAGAAAGAGTGTGATGCGTGC
AGGGGATATGCACATGTTCATGTGTGTATATGAAGAAGCCAGGGCGGATG
TCAGGTGTCTTCCTTTAGTGCTTTCCATCTTACTGTCTGAAGCAGGGTGG
CGTATTGAACTGGTAGCTTGCCTTTTGGCTCGGCTGATGGGCTTTGGATC
ACTCTGGGTCTCCTGTCTCTCCCTCAGTGCTGGGTTCTAGGCACAGGCAG
TGTTTTCACATGGTACCAAGGAATCAAACTCAGGCCCTCAAGCTCGCATA
AGCTCTCGTCCACTGATCCATTGCTCCAGCCTCGATTTTCCCTTCAAATA
GCAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_p22.g1 MSMg01no156_p22.g1 CHROMAT_FILE:
MSMg01no156_p22.g1 PHD_FILE: MSMg01no156_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:15 2005
         (292 letters)



>mm_chr15_85219009_85219701
          Length = 693

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%), Gaps = 1/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgccagttggttattgtcttgattgccttcaggtagacatgagttctcttcctgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgccagttggttattgtcttgattgccttcaggtagacatgagttctcttcctgtaaa 260

                                                                       
Query: 61  agaaaagaggacatctcagcactgatttacctttctggggacaattgtttttgttcccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 agaaaagaggacatctcagcactgatttacctttctggggacaattgcttttgttcccag 320

                                                                       
Query: 121 cagggggagcagtgaggtgtggttgaaaaacatttaaaacttaattttctaggaaacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggggagcagtgaggtgtggttgaaaaacatttaaaacttaattttctaggaaacata 380

                                                                       
Query: 181 aaaaaaaa-tccttcaatatttgttaaatcacatctgactttaaattgttcacaagactt 239
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaaaaatccttcaatatttgttaaatcacatctgactttaaattgttcacaagactt 440

                                                             
Query: 240 gtgtttaaagtaattttagtcttatagtgggatacgcctgctctctctct 289
           |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 gtgtttaaagtaattttagtattatagtgggatacgcctgctctctctct 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space:   193572
Effective search space used:   193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)