BAC Information

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BAC

Clone NameMSMg01-158I11
Chromosome15 (Build37)
Map Location 24,269,015 - 24,269,248
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624863, LOC666989
Downstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik, 4930445E18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158I11.T7 (MSMg01no158_i11.b1)MSMg01-158I11.TJ (MSMg01no158_i11.g1)
ACCAG358719AG358720
length733755
length of high quality
(start - end)
234 (117 - 350)288 (65 - 352)
definitionCHROMAT_FILE: MSMg01no158_i11.b1 PHD_FILE: MSMg01no158_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:04 2005CHROMAT_FILE: MSMg01no158_i11.g1 PHD_FILE: MSMg01no158_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCTCCCTGT
TTGACTAAATGGTGTGCTCTGCATACCAACATTCTCTCTGCCACCCTAGC
ATTGGATTGACCCCAATTATCAGCAATCCATGTTTTTATGTGACTGCTGA
GAAGAATACCCGTGTATGCATGCTTTTTCAGCAAGTATGTTTATTGTTGA
ATCATCTGTCATTCATTTTCCTTGTCTACATCACATAGTATTTAATATTT
CAAATGTCATTTGGGTTATTGTTTTCTTCTGTTTGTGGAGGTGTATATGG
CTCAGCTTGTTTGTTCTCAGCTATTTATAATATCCCATTTATACTTTTAT
ATTATTTTTACACCCCTAAAGATAAAAATAAAAACAAATTGTCACATATA
AACCCCCCCCCACAGCATAAACTTGCAAAAGTACAGCTATGCAATATGTT
GCATATATTTTTTGTCTCTAACACTTTTATATGGCGTGTGTGTGCGTGCG
AGTTCCTGCTCTCTCTCTTTCTATATTACTATTCTTTCATTACTCTCTTC
CCTTCTCATCTTTCCGCAACATCTATTTCTTATTTCCTTCCTCCTTATCC
AACTACATTTTTTTCCATCCCCCTCTATTACTATTCCACCTCTTACTCTA
CTCTTACCACTTTCTTCTCTTATTCTCTTCTACTTCATTATCCTACCCCT
TTCATTCTCACTTTCACTCCTTCCATATTCTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTTGGTAAAATTTACCTGTGATTATTATGAAGTGT
CCCTCCTTATAGTTTTTGATAACTTTAGTGTAAAAGTCTATTTTATTCGC
TATTTGAATGGCTACTCCTGCTTGTTTCTTGTGACCACTTGCTTGGAAAA
TTGTTTTCCAGCCTTTTACTCTGAGGTATTGTCTCTCTTGTCCCTGAGGT
GGGTTTCTTGTATGCAGCAAAATGTTGGGTCCTATTTGCATAACCAGTCT
GTTAGTCTATGTCTTTTTATTGGAGAATTGAGTCCATTGATATTAAGATA
TATTATTGACCCCCCCCCGTCTCTCCCTTTTATTTTTGCCATCAGAGTTA
TTACCCCCCCCCACAAAAAAAATCTTCTTTTAGGGTTGTTGAAAGATTAC
TTTCTTGCTTTTTCTAAAGGGTAATGTCCCTCCTGTGTTGGAACTCTCCT
TCTATTATCCTTATGTAACTCTTCTATCTCGTTGAAAGATATTGTCTTAC
CTTTTTCCTTCGTCTTTTATTTACCTTATCATTCTCCATCTACTCATAAA
TTTATTTCTCTACCCCTCTTTATCTCTTCTATCTTTTCTCCTTTTTTTCC
TCTTACTGCTTAATTCTCTCCTTAAACCCTTTTATTCCTTCTCACATTTT
CTCATTATATTCCCCTTCATAACCTCTTTATTCCCTTTTCCTTCCCTCCT
CTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_i11.b1 MSMg01no158_i11.b1 CHROMAT_FILE:
MSMg01no158_i11.b1 PHD_FILE: MSMg01no158_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:04 2005
         (234 letters)



>mm_chr15_24268815_24269448
          Length = 634

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatcagcaatccatgtttttatgtgactgctgagaagaatacccgtgtatgcatgcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttatcagcaatccatgtttttatgtgactgctgagaagaatacccgtgtatgcatgcttt 375

                                                                       
Query: 61  ttcagcaagtatgtttattgttgaatcatctgtcattcattttccttgtctacatcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttcagcaagtatgtttattgttgaatcatctgtcattcattttccttgtctacatcacat 315

                                                                       
Query: 121 agtatttaatatttcaaatgtcatttgggttattgttttcttctgtttgtggaggtgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agtatttaatatttcaaatgtcatttgggttattgttttcttctgtttgtggaggtgtat 255

                                                                 
Query: 181 atggctcagcttgtttgttctcagctatttataatatcccatttatacttttat 234
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atggttcagcttgtttgttctcagctatttataatatcccatttatacttttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)