BAC Information

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BAC

Clone NameMSMg01-159B02
Chromosome15 (Build37)
Map Location 44,871,136 - 44,871,692
singlet/doubletsinglet
Overlap genenone
Upstream geneTrhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950
Downstream geneKcnv1, LOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159B02.T7 (MSMg01no159_b02.b1)MSMg01-159B02.TJ (MSMg01no159_b02.g1)
ACCAG359108AG359109
length731732
length of high quality
(start - end)
301 (429 - 729)557 (75 - 631)
definitionCHROMAT_FILE: MSMg01no159_b02.b1 PHD_FILE: MSMg01no159_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:43 2005CHROMAT_FILE: MSMg01no159_b02.g1 PHD_FILE: MSMg01no159_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCTTATGTTTTAAGACCTTGTCATGCTTTGTGCATGCCTAACA
CCTTAGCATTTGGGGTTCTGACCCAGGGGGATTACTAAGAAGCAGTGTGA
TGTTTTGTGACAAAACTGTTCCTAAGGCTCTGCAAAAAAGGATATACAGA
TTATAAGAGCTATTATATCTGGAAGTTTGTTGTGAGTCTGTGTCTGTGAA
TAACTTCAGAGGCTCCATTCAGGAAGTCTCATCAATATGACGACCTGAAC
ACGGACAACAGTAGACATGTTATGGGGGATATGAGAGAAAGACCAAGAAT
CCTCTTCCNATACGACGAANTCAGNACCCCAAGAAATGCAACAAGCATAA
AATATAGTCTTCCAAGGAAAAAAACACAACTTGTTTGTCTAATACTAAAA
GGTCAACCCTGAAAACATACATACAAGTAACATAATACTATCAACAAAGC
AGGTTATATTAAGAAATGTATGAGTGTGCATATACATGCATGCATGTAAC
AACAATTAATGAAAAAAGAGGCCATGAATTTGAAAGAGAGCAAGGGCTTA
TTGGAGGATTTGGAAGGAGGTCAGAGAATGTGTAAATGATATAATCACCA
AAAATAAAAGAAATAATTAAACCTAATCAAATTCACATTTCCATTCTTTA
TTACTGCAGAANAGTACAAAACTGTGGACCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTAGTTTGAGAAACTTTATGCCTGT
AAAACAAGAGGTGCCGTCAATGAAATACAAGCCACCTGTGATAGTTTTAG
CTGTCATCCAATATGTACAAAGTGACAAGAACCTTTCAACAGGTTTTTAA
AGTCTGTGGTTTCAGATAGATGCAGGTAAGTCATACATGGGGCAGATATA
CATAAATTGAACAATATAGGGTTGTGTGTGAAATAAACACAAGGGTCTTG
TAAATGCTTGAGTAAATAAGGACGATATTACCAAGAACAGAAATATCACT
TTTTCAGTTTATTTGTAGGCAAATTTTCATGGCATATTTCATCGCCACAT
TAATTGGAAAGCTTAGTGGTCACAAAAAACAAACAAGCAAACAAAAAACC
TTATTCATAGCAAATTGAATGGGACCACTGGCTATATAGTGTCTGCACAA
AAAATAAAACCCAAACCATGATGATTTTTAAAATGGTACTGCTGTGAATC
AGTTATATAAGAGATAAAAAATAGGATGTCTAGTTTAGTTCACAAATTAT
TTTCCCTATTTTATTTTTATTTTATTTTATGTGTGGGGCACCCATTGGCT
CAGAGAGCCTTGTACTATTGTGTGGTGTGGCCTTGTTGGAAAAAGTGTGT
CACTGGGTTTTGATGTCATAGAATTTCAAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_b02.g1 MSMg01no159_b02.g1 CHROMAT_FILE:
MSMg01no159_b02.g1 PHD_FILE: MSMg01no159_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:43 2005
         (557 letters)



>mm_chr15_44870936_44871892
          Length = 957

 Score = 1023 bits (529), Expect = 0.0
 Identities = 550/557 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagtttgagaaactttatgcctgtaaaacaagaggtgccgtcaatgaaatacaagcca 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagtttgagaaactttatgcccgtaaaacaagaggtgccgtcaatgaaatacaagcca 260

                                                                       
Query: 61  cctgtgatagttttagctgtcatccaatatgtacaaagtgacaagaacctttcaacaggt 120
           | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtgatagttttagctgtcatctaatatgtacaaagtgacaagaacctttcaacaggt 320

                                                                       
Query: 121 ttttaaagtctgtggtttcagatagatgcaggtaagtcatacatggggcagatatacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttaaagtctgtggtttcagatagatgcaggtaagtcatacatggggcagatatacata 380

                                                                       
Query: 181 aattgaacaatatagggttgtgtgtgaaataaacacaagggtcttgtaaatgcttgagta 240
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 381 aattgaacaatatagggttgtgtgtgaaataaacacaagggttttgtagatgcttgagta 440

                                                                       
Query: 241 aataaggacgatattaccaagaacagaaatatcactttttcagtttatttgtaggcaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 aataaggacgatattaccaagaacagaaatatcactttttcagtttatttgtagggaaat 500

                                                                       
Query: 301 tttcatggcatatttcatcgccacattaattggaaagcttagtggtcacaaaaaacaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcatggcatatttcatcgccacattaattggaaagcttagtggtcacaaaaaacaaac 560

                                                                       
Query: 361 aagcaaacaaaaaaccttattcatagcaaattgaatgggaccactggctatatagtgtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagcaaacaaaaaaccttattcatagcaaattgaatgggaccactggctatatagtgtct 620

                                                                       
Query: 421 gcacaaaaaataaaacccaaaccatgatgatttttaaaatggtactgctgtgaatcagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcacaaaaaataaaacccaaaccatgatgatttttaaaatggtactgctgtgaatcagtt 680

                                                                       
Query: 481 atataagagataaaaaataggatgtctagtttagttcacaaattattttccctattttat 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atataagagctaaaaaataggatgtctagtttagttcacaaattattttccctattttat 740

                            
Query: 541 ttttattttattttatg 557
           |||||||||||||||||
Sbjct: 741 ttttattttattttatg 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)