BAC Information

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BAC

Clone NameMSMg01-160N12
Chromosome15 (Build37)
Map Location 25,894,535 - 25,894,690
singlet/doubletsinglet
Overlap gene1810015C04Rik
Upstream geneLOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1
Downstream geneZfp622, AK162044, Fbxl7, LOC622531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160N12.T7 (MSMg01no160_n12.b1)MSMg01-160N12.TJ (MSMg01no160_n12.g1)
ACCAG360405AG360406
length779761
length of high quality
(start - end)
274 (51 - 324)280 (72 - 351)
definitionCHROMAT_FILE: MSMg01no160_n12.b1 PHD_FILE: MSMg01no160_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:55 2005CHROMAT_FILE: MSMg01no160_n12.g1 PHD_FILE: MSMg01no160_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCATGAGCTTTGGCTACAGGGCAAGACCCCCATCCTGGAA
TAACAACACAGAAACCAAACGAGCTTTGACAAGAACATTCACTGTGGTCA
GGCAACTGGAATACTTGTGATTTTTTTTTTGTTTATTTGGTTTTTTTATT
TTATTTTGCCTCTCTTTCATGGTCTGAGACTCCCTCGGCTCCTCTCCTGG
TACTAGGACCTCTCTGCTTTCTCAGGTGTGATGTTAGCGAGATGGAGGAC
AAGAAACATCTATTTTGTTTTATTGCTGTTGCAACATTTGTCCATTGTGT
GTTGTTTTTTTATTTTCCCCGACAACCCCACAATTTGAAGTAGGTTTTCT
CTTTTCATCCTCCCCCCACATTTAAAAAAAAAACCTTTGGTGTGTTGTTT
CGCGTTCTTACCTTGATGAGGCGCATCTCATCTGTGTGCCGTTTTTTTTC
CTCGTGCTTCCTTTTTTTCCTTTTTTCCCACCCCCTTTTTTCCGCAACTT
CCCTTTTTTATTCTTTCTCCTCTTTCCCTGCTGGCTTCTGTATTATCGTT
TTTTTTCATCTTATTAATTCCTTCGCCCTTGTATGTTTTTATTCTCCTGC
CCTTGCACTTACCTCCCCTCTCTCTTTTTCTCCTCTCAAGCCTAATTTTG
CCTGCGTAATTACTGTATAGCTCTATTCTATAACTTTCCTATTTCAGTAT
CTGTCTTTGTCTTTTTCATATCCTCTTTC
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGAATTTGAAGAAGACAAAAAGAAACA
ATTTGATGAACTTAAAGAAAACAAGCACATGGATGATACCCAAGAAAGCA
CAAAGATAAAGCCGAATGAAATGATGAAGACAGTCGAATTTGAGAACATA
TGCAATAAAGATACAGAAATGTTGAAAGAAACTCAATCTGAAATGAAAAT
GGAACTGGAAAACTCAATAACCCAGTTAGCAAACTCAACAGAAAGCCCAA
TGTGTAGAATTGATCAAGTATCATATAGAATGTCAGGACTCAAAAATAGA
GTCGATTATTTTTTTTTCACCCCCCCCCCATTTAAAAAATATATTTTAAA
GGGTAAGAAAGGAACACATTGTAAATATAAAACATCACGAAAAGGCCAAA
CCTTCTGATCATAGGCATAGATAAGGAAGAAAAATCTCTAAGTCAATGAA
ATAAGCCAGATCTTCAACAAGATCATAGAAAAAAAACTTTTTCAAATTAT
TGAAAGACAGACTCTTACTAATACCAGAGGTATACAGATCGTCAAATAGA
CCAGAAAATTCTTGTGTCATATCACAGAATAATGATGAAATATGCAAAAA
TTAAAGAAGGATTATTTCAAGTTGCATATAAATATCTAACTATTTATTTA
AGCCCCCTTTTTAAGGGAAAGCTTTCAAAAAACCACTCGATTCTTCATGG
AAATTTTTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_n12.b1 MSMg01no160_n12.b1 CHROMAT_FILE:
MSMg01no160_n12.b1 PHD_FILE: MSMg01no160_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:55 2005
         (274 letters)



>mm_chr15_25894331_25895006
          Length = 676

 Score =  248 bits (128), Expect = 3e-70
 Identities = 149/156 (95%), Gaps = 2/156 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatgagctttggctacagggcaagaccccc-atcctggaataacaacacagaa 63
           ||||||||||||||||||||||||  ||||| ||||| ||||||||||||||||||||||
Sbjct: 205 gaattctcatgagctttggctacacagcaagcccccccatcctggaataacaacacagaa 264

                                                                       
Query: 64  accaaacgagctttgacaagaacattcactgtggtcaggcaactggaatacttgtgattt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 265 accaaacgagctttgacaagaacattcactgtggtcaggcaactggaataagtgtgattt 324

                                               
Query: 124 tttttttgtttatttggttt-ttttattttattttg 158
           |||||||||||||||||||| |||||||||||||||
Sbjct: 325 tttttttgtttatttggtttattttattttattttg 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 676
Length adjustment: 9
Effective length of query: 265
Effective length of database: 667
Effective search space:   176755
Effective search space used:   176755
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)