BAC Information

Click to search

BAC

Clone NameMSMg01-160N19
Chromosome15 (Build37)
Map Location 97,002,136 - 97,002,416
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4
Downstream geneAmigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160N19.T7 (MSMg01no160_n19.b1)MSMg01-160N19.TJ (MSMg01no160_n19.g1)
ACCAG360419AG360420
length723738
length of high quality
(start - end)
54 (149 - 202)285 (71 - 355)
definitionCHROMAT_FILE: MSMg01no160_n19.b1 PHD_FILE: MSMg01no160_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:56 2005CHROMAT_FILE: MSMg01no160_n19.g1 PHD_FILE: MSMg01no160_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGGGACTACATTGCTATGGATCTTTCCCTCCTGTGTCTCTAATCTAGC
ATCAAGCCACAGCCTACTGGTCTGGTTTGGCATAATGAGAAAAAGAATGG
GAAAGCTTCTGGCAAAGGTGCTTGATGAAAGATAAAGTCTTTTCTGAAAT
TATCTTAGAGAAGTAGGGAGAGCTGTGAACCGGATCTCTTGTCTATTTCT
TGTGCATTCTTAACCGTTACAGACATGAAGGGTGAAAGCGAGCCCTGGCT
CCATTGTCTGCGAAGTAATTATATCCTCTCTTCAAATATATTCACAGAGA
CACAGCGGTGATTATTTGCACCTACCACCCCCCGCGAATCCGAGGGGACA
AATAGCGAAAAGCGATGTCCCCAACAAGTAACAGAAAACGAGGCACTCCA
TGAGTGGGTGCTATCAACATATGATACAACCACCGGGAAAGAGGGTTTCT
CAATAAAAATAATGTTTAGCCAGACAATGCTGGGGCACGGCTTTAATCCC
AGAATACGAAAAAAACAAGCTGGGGGAGGTTTAAAAAGGGGGACAATCGG
GACCAAGTGAACAAAACCACAGGAACCACGGGTAATAAGGGAAATGATGC
CAAAAGGGGACCTGAGGGAAAAATGGGGGGGGGGCGGGGAAAAAAAAAGG
AAATGTGTGAAAACAGGGGTTAT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTCTTTCCTGCATCCCTTGCCCGGGAATC
CTAAAACTCCCACTCTTTCTCCTTGCCCAGCCATTGGCCGTTAGCAACTT
TATTTCCCAATCAGAGCCAACTGGGGACAGGCTTCCTTTAGCCTACACGA
CCAGGCCGATTTCAGGACCACGTTTGGGAAGCAAGTCAGACTGCATGGAT
TTTTGGAGATAGTATTGGTGAGAAAGACAATAGATGTGAGTGTCTGTTTT
AAGCAGGACAAAGAATTAAGAAGGAATTTGTGCTTAAAACAAACTCTCCC
CTTTTTTTTTACACCCCGCCCCCCCGGTGTAAAACCATACCGGAGAGAGT
CTTTTTTCCCCCCCCAAACAAAACAGAAGGAACATGGGGCAGAAATGATT
GACATCCAGGGAGCGAGGGGCCAAAGGAGCTGAGAGAAATGGCTTTTTTC
TCTAGCCCCCAAAGGTGTTTATACATCCGCATTAGCCCTTCCCGCACTTT
CTACCCTTATATTCCTTTTTACTCACGTTTCGCCCCTTTGATCTTTTCTA
TACACGCCATAACGCCCCCTGTCCCGCCGAATCATGTCTATCTCTTATAT
ATTTTATCCAACATCTTACCTCTCCCCAATTTAACCACCGTCACCCATAA
AACCAACGCGCGGTTGTGGGTGTTTTTTCCTGTGCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_n19.g1 MSMg01no160_n19.g1 CHROMAT_FILE:
MSMg01no160_n19.g1 PHD_FILE: MSMg01no160_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:56 2005
         (285 letters)



>mm_chr15_97001790_97002474
          Length = 685

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctttcctgcatcccttgcccgggaatcctaaaactcccactctttctccttgcccag 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cttctttccttcatcccttgcccgggaatcctaaaactcccactctttctccttgcccag 568

                                                                       
Query: 61  ccattggccgttagcaactttatttcccaatcagagccaactggggacaggcttccttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccattggccgttagcaactttatttcccaatcagagccaactggggacaggcttccttta 508

                                                                       
Query: 121 gcctacacgaccaggccgatttcaggaccacgtttgggaagcaagtcagactgcatggat 180
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 507 gcctacacgaccaggctgatttcaggaccacgtttgggaagcaagtcaaactgcatggat 448

                                                                       
Query: 181 ttttggagatagtattggtgagaaagacaatagatgtgagtgtctgttttaagcaggaca 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 447 ttttggagatagtattggtgagaaagacaatatatgtgagtgtctgttttaagcaggaca 388

                                                    
Query: 241 aagaattaagaaggaatttgtgcttaaaacaaactctcccc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aagaattaagaaggaatttgtgcttaaaacaaactctcccc 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)