BAC Information

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BAC

Clone NameMSMg01-161F08
Chromosome15 (Build37)
Map Location 57,897,412 - 57,897,819
singlet/doubletsinglet
Overlap geneZhx1
Upstream geneBC026439, Zhx2, Derl1, Wdr67, BC030396, 9130401M01Rik
Downstream geneAtad2, LOC665244, 2410187C16Rik, Fbxo32, 8230402K04Rik, Anxa13, LOC100040231, D15Ertd621e, EG631797, Tmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161F08.T7 (MSMg01no161_f08.b1)MSMg01-161F08.TJ (MSMg01no161_f08.g1)
ACCAG360763AG360764
length1,2581,258
length of high quality
(start - end)
411 (43 - 453)381 (70 - 450)
definitionCHROMAT_FILE: MSMg01no161_f08.b1 PHD_FILE: MSMg01no161_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:49 2005CHROMAT_FILE: MSMg01no161_f08.g1 PHD_FILE: MSMg01no161_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGAGCATTCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGGGACCCTGCTCCATTTAGTCTCACATTCTCACCTCTCAATCAGAG
CTCTATTCGGCTAGCTGGAAATGTTTAGTTTCTCATGATTACAAATCTAG
TAAGATCACAAAATACTTATATACAAACACTGGGATCCAATTCAAACAAA
AAGTACCCACTGTCCTTATACAAGAGAGACAGACAGACAGACATGCAAAA
AGGTAAAATGGCATTCATATTCTAAAGGCATTTTCACATTTAAAAATGTA
AACATTTGCATAGCCTAATTCTTAAAAATATTTAATTAGGAACTTGACAA
CCCAAATGTGTAGCCATGTAAATGCTTTTAAAATATTACTGGCACTTAGA
ATCATTACCTAAAAGATAAACCTCAGGAAAATGTCAAAACCAAAAGCAGT
CCAGTTTTTTTTCCCCCCCCCCAGAAATGGATATGACAAAAGAAGAAAGG
GCTGAAAGCCGTGACCAAAGGTGAACTCATTACAGAGAATTCCTTTGCCA
ATGCTAATGAAGGCTGAAAGGTAAGGAGCTACCACTGCTACCTAGTTTTG
TTCAAGTCAGAGAGTGGAACTTAATGACACTGAAGACTTAAAGAATCCAG
GCAGGACAGGTTCGGCTGGAAAACTCGGGTCCCATTATTTGAGGAGGAGA
ATGTCCCTAGGACATTACCAGCCCAGCTGGCATATATGTGCTGTGAGGTG
GGGTATTACATTGAGTGGCATAAACTAGCTCTATCATGAAACTGACTTGT
TGACAGTTAGTGAATGGGACCCAAAAGTGCTTGTCTGCTGCAGACAGTTT
TTCCTAGTTTTTGCAAGAATGTGTGCTGTGGCCCGGNCGGTGTTGGCGTA
CGCCTTTAATCCCGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAATTC
AAGAACAGCCTGGTCTACCAAGAAATCCCTGTCTCCTANTTTATAATATT
ATAAACCAAAAAATGTGGTTCGTGGCTTCCCCACTAAAAATGTTTTTGTT
CCAAAAATTGTGTTAAAACCCTTTCAAATAAAAAGTAAAAATTTCCAGTC
CTCCCCCCCCCTGGTCAGGTTGGGGGGTCCCCTTTTCCCACCTTGTAAAG
GGACGAGACCTCCTTAAAAATATAAAGGGACTCATACCGTGTTCCCGGTA
ATTCTCCTCTTTCAAAATCAATAAGATTGTGAACCCCCTCTGTCATAAAT
AAAAATTC
NNNAACTCTAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGGGGGTGGAGGATAATCTTTGAATGTGC
TCTGTTTGCGTATACACCTATCTGTGCAGATACACATATGCACATATGAG
CGCATGAGTATTGAGGCCAAAGGTCACAGACTCCTGTTTTTCTCAATAGC
TCTCCACATTTTAATTTTTTTTTCCTTTGAGTGAACCAGGAGCTCACCAG
TTTGACTAGACTGTTTGACTTGTTTGACTAGTTGACAGTTTGACTAAACC
AGTGAACTCCAGAGATCCACCTATCTCAACCCCAGTGCTAGGGCTTCAGA
TGCATAGCTCCATGCCCAGCTTTTGTGTGGGTACTGGGAATCCAAACTCT
GGTTCTCATGGTCACACACCAATCACTTGCCCCACTAACTGCTTTCCCTT
TTTTTTCCCCCCCCCCACATTCTTTTGTTTTTAAAAAAAAAAGGAACTTG
TAATCACATACATACATACATACATACATACATACATACATACATGTTTA
CTTGTGGTTATGAGAATATAAGGTCCATATATAGAGCACTGTCAGGATGT
CAGCTATCTTGGAGCCAAAGTTACAGGTGATTGTGACCCAGGTACAAGAC
CTGAACTTGAGTCTCCTGAAAAAGCAGTGCATGTTCTTACTAGACTGTAG
TGTAGGCTCCAGCCCCTGTAGTGGCATTCTTGATAGAGAATTGTTAAAGT
GAGTTACAGCACCAGGGAGCTGCCCCAGAGAACTCAGACCTAACTATGAT
GCTCTCTCTAGGGCACTGACCATCCGTGCACGGCCAAAACCCAGAGAGCT
GCTCCGTCTCACTTTCCCCCTCAGACTTTATCAATTTGTTCAAGTTCTGA
ATAACCCAGCACACGACAACACTTCAAAAAGTCTTCTAATTGGATGGCTG
GGAATCGGGAACCTTTCTTTTGTAAAAAGTGAACATTTTAATCTTTGGCT
TGAAACTGGGGGGGAAAACTCTTTTGAGAAAAAATTGTTGGGGAAAAAAA
TTCCCTTTGCCCAAGGAAATTTTCANATGTGGAATTCCCCCTGAAAACTG
GCCTCCAAAAAACAAAAATATTTCTAATAAACCTTCTTATTTTTTCTTAC
CATTTTCTGGTCCAGACTTTATATGGCGAACTTTCTTTCTCTCCTGGAAA
GGAAAGCCCTTTGGTCTCCTTGCTAAAATTTGTAAATTCCATAAACATTA
TACTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_f08.b1 MSMg01no161_f08.b1 CHROMAT_FILE:
MSMg01no161_f08.b1 PHD_FILE: MSMg01no161_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:49 2005
         (411 letters)



>mm_chr15_57897209_57898019
          Length = 811

 Score =  789 bits (408), Expect = 0.0
 Identities = 408/408 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgggaccctgctccatttagtctcacattctcacctctcaatcagagctcta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgggaccctgctccatttagtctcacattctcacctctcaatcagagctcta 263

                                                                       
Query: 64  ttcggctagctggaaatgtttagtttctcatgattacaaatctagtaagatcacaaaata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcggctagctggaaatgtttagtttctcatgattacaaatctagtaagatcacaaaata 323

                                                                       
Query: 124 cttatatacaaacactgggatccaattcaaacaaaaagtacccactgtccttatacaaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttatatacaaacactgggatccaattcaaacaaaaagtacccactgtccttatacaaga 383

                                                                       
Query: 184 gagacagacagacagacatgcaaaaaggtaaaatggcattcatattctaaaggcattttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagacagacagacagacatgcaaaaaggtaaaatggcattcatattctaaaggcattttc 443

                                                                       
Query: 244 acatttaaaaatgtaaacatttgcatagcctaattcttaaaaatatttaattaggaactt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acatttaaaaatgtaaacatttgcatagcctaattcttaaaaatatttaattaggaactt 503

                                                                       
Query: 304 gacaacccaaatgtgtagccatgtaaatgcttttaaaatattactggcacttagaatcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gacaacccaaatgtgtagccatgtaaatgcttttaaaatattactggcacttagaatcat 563

                                                           
Query: 364 tacctaaaagataaacctcaggaaaatgtcaaaaccaaaagcagtcca 411
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tacctaaaagataaacctcaggaaaatgtcaaaaccaaaagcagtcca 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)