BAC Information

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BAC

Clone NameMSMg01-163E18
Chromosome15 (Build37)
Map Location 5,115,784 - 5,116,065
singlet/doubletsinglet
Overlap genePrkaa1
Upstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281
Downstream geneTtc33, Ptger4, LOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163E18.T7 (MSMg01no163_e18.b1)MSMg01-163E18.TJ (MSMg01no163_e18.g1)
ACCAG362155AG362156
length715715
length of high quality
(start - end)
311 (47 - 357)285 (79 - 363)
definitionCHROMAT_FILE: MSMg01no163_e18.b1 PHD_FILE: MSMg01no163_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:52 2005CHROMAT_FILE: MSMg01no163_e18.g1 PHD_FILE: MSMg01no163_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTAGTCTTTACATTGTTTGAGTACATATGCCCCAGCCTGTAATA
TACTCTAATAAGTCATATATGTAATTTATAATATGTATATTATATGGTAA
CTTTATTAATGCACATGTTATTGAATATTATACTATATATAATAAAATAT
GTTATATAATTATTAAATGATACATAATATATAAGATTTATTACAGTAGC
TTACTGTTGCAGGATATTTGATCACATTGTGTTATTTACTGAAAAGCCCT
GTTTCTAGTTGTGGTGTGGTTCATCCTTAAAACACATATTTAGTCCCTCT
GGCTGTTTTATTTTTATCNNNTCATCCCGCACCTTTAATCCCAAATAATA
AGGTGAAGCAATGACCCACCCATGTTTGAAGTATGTCTAATTGAGTGGCA
GACAATGTGATGAATCAGAGAAAGATTTGACAGGATAGAATGTGTCCACC
TTTAATGAGAAGAGAGAGAAAAGAGAAGCTACTTAAGAGAGTAGTGCAGG
AAGAGAAGAAAGTGAAGGAAAAAAAAGGAAACAGTTTTACCAGGACAATT
TTACAGAGATAGGTTGAAGAAAGAGAACAAGCTAGACACAGGTTAATACA
GAATTACCCAGAGAGCAAGAAGGAGCAGAATGATTAANACACAGCAGAGA
AATTCATTCAGGAGA
TCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAATTGATCAATGCCTGC
ATTTCTCATCTCTCTCTTTTTTTTTCCTCCCATTTGTCATTTCTAGTCAT
TTTGCTATACATTGTGGGGATGTCTTTAGTGTTACCTTTTGAATGCCAAC
CTTCCAGCTGTCACATGTTTGTATTTCAGATTTCTGCCTTATTTTCTGAA
ATTCCCTTTGGATAGCTGCCTGTTTGGCCTTACCTTTTTGAGAATGACAT
TTTGGCTTTAAATGTCTTTTGGTCACTGCACCGCTCCGTTTTCCGTGCTT
TCCGCTCACCTCTTTTTTTTCCCCCCCCCCCTGTTCATTTTGTCCCCCCC
CCCCCCCCAACCCTCCCACACCCTTAGAAAAATATCTGGCCATTCTTAGC
TGTCCACTTAAATTTCAGAACAAAGTCACACCACATGCCAAGCCCGTGGA
TGTGTGCTGTTTATGGTTTTCCCTCAGGTTGCATTGTTGGAGACATTAAT
TTTGGTAGGGTAAATTCTTTGCTCACAAGCACAAGTGTTTTTCTTCGCTT
GATTTGGTATCTGCTTTTTCCTATTTTCTTGAAAGTATTGGTTTACCTGT
TGGAACTGACTCGGTAGATGGGGTCAGGTCTTTCCTGTTAGTATGCACAT
AATCTACATCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_e18.g1 MSMg01no163_e18.g1 CHROMAT_FILE:
MSMg01no163_e18.g1 PHD_FILE: MSMg01no163_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:52 2005
         (285 letters)



>mm_chr15_5115584_5116266
          Length = 683

 Score =  491 bits (254), Expect = e-143
 Identities = 276/284 (97%), Gaps = 2/284 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccgaattgatcaatgcctgcatttctcatctctctctttttttttcctcccatttgtc 60
           |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 201 ttccaaattgatcaatgcctgcatttctcatctctctc--tttttttcctcccatttgtc 258

                                                                       
Query: 61  atttctagtcattttgctatacattgtggggatgtctttagtgttaccttttgaatgcca 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 259 atttctagtcattttgctatacattgtggggacgtctttagtgttaccttttgaatgcca 318

                                                                       
Query: 121 accttccagctgtcacatgtttgtatttcagatttctgccttattttctgaaattccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 accttccagctgtcacatgtttgtatttcagatttctgccttattttctgaaattccctt 378

                                                                       
Query: 181 tggatagctgcctgtttggccttacctttttgagaatgacattttggctttaaatgtctt 240
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 379 tggatagctgcctgtttggccttacctgtttgagaatgacattttggttttaaatgtctt 438

                                                       
Query: 241 ttggtcactgcaccgctccgttttccgtgctttccgctcacctc 284
           |||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 ttggccactgcaccgctccgttttccgtgctttccgctcgcctc 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 683
Length adjustment: 9
Effective length of query: 276
Effective length of database: 674
Effective search space:   186024
Effective search space used:   186024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)