BAC Information

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BAC

Clone NameMSMg01-164M11
Chromosome15 (Build37)
Map Location 88,748,473 - 88,748,780
singlet/doubletsinglet
Overlap gene1700019P01Rik
Upstream geneLOC100042329, LOC100042340, Zdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3
Downstream geneMlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164M11.T7 (MSMg01no164_m11.b1)MSMg01-164M11.TJ (MSMg01no164_m11.g1)
ACCAG363142AG363143
length751780
length of high quality
(start - end)
315 (41 - 355)286 (70 - 355)
definitionCHROMAT_FILE: MSMg01no164_m11.b1 PHD_FILE: MSMg01no164_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:43 2005CHROMAT_FILE: MSMg01no164_m11.g1 PHD_FILE: MSMg01no164_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCTGCTGAATATATGTGGTCCATTCCCATCTGGTGCCCTGCAGACAGTC
AGGGCTTCCTCCATTCTTCTGTGATGCTGTGGCCTTGCTTTGCAGCTGTG
TTCCTTCCTGGGCTCTGGGCTCAGGCCCCTCCCCATCCTGAGACGTCTCT
GTCTCCCCTCACCGTCAGGCCATACCTTCCTCCCACTGAAGACTCCATTC
TCAGGGGCACTCTGTAGATTGTTCAGATGTGTGGGTCAAATGCCTGTGCT
CTTGCCTAGTACTGGTAGCCCTTGGTGACTTCCCAGGTGGCTTCAGCAGT
TCCTTTCTTTTTACCCCACCCCTCAACTTGCCGTGACTAAATAAATGGAA
GCCATGTGCCCCGTGAGATCTATCTTCCCTTGTGCCCGTGGGACACTGCG
ACTGGAAGCCTCTCTCTACTACCTTCTATCATCAGAATTGATGACCACAC
GTCCTGTGTAACGGTCCCCCCAAATCTCAGCAGAAACTTGTGTCCCTGGC
CAGCTTGCAAGGTTGCTCTGCCTATCTTGTGGACTCGCTCTTGCCCTACA
TTGTCTTGTAAGGAAAAAGTGAACTGCACGCTCTGTCTCTGATACTCTCC
CCATCACATGATCACAACGAAAATTTTGGGTCCCTACCTTGCTGCCATAC
TATCTCAGACTAACCTATTTGAAGATCATGTTTGTTAAACACTATAGTTT
T
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGGGTCAGGGCTACATAGTAAGACCCTGT
CCAAAACTAAATAAGTAAAATAAAATATTTAATATAAACAGATACTTAGC
TGAACCTTGATTTTGTAAAGAAATGTATCTAAGTAGTTCTTTATGGCGCA
CGCCTTTAATCCCAGCACTTGGCAGGCAGAGGCAGGCGGATTTCTGAGGA
CAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACAAAAAAACAAAG
CAGAAAATGGTGCTGGTGTGGTAGCTCAGTGGTTAAGAGTATTGGCTGTT
TTTCCTTATTTTTGCCCCCACCCCCCACCATCCTCATGTGATTTCATCCC
CAGAGGACCCACCGCTCTCTTACAGAACTCTGGGGGCACTGCTCACATAT
GTTGCACAGACATTTATTCAGGCCAAACTCCCTTGCACTCAAAATAATTG
TTTTAAATACTTGCAAAAAACAGGTCGGTTTTTTCGCTCGCTTTGCCTTA
TTGCCTTTCTCTTATTCATATATGTCACCACCTATATTGTTTTATTAACT
TTTATTACATAATTTATTTAACCTTCTTAAGTTGATATGATTTATTAATT
ATTGTATTCCCCAATAATTTTTTTTTATTACATATAACATTTCCTTAACT
ATGACTTTATTTTCTCCCTGTTTTGCCTTAACCCCCTTCCTACTCTCTTC
TCTACTTTAGTTACTCTTCTATCTTTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_m11.b1 MSMg01no164_m11.b1 CHROMAT_FILE:
MSMg01no164_m11.b1 PHD_FILE: MSMg01no164_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:43 2005
         (315 letters)



>mm_chr15_88748269_88748983
          Length = 715

 Score =  557 bits (288), Expect = e-163
 Identities = 303/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctgctgaatatatgtggtccattcccatctggtgccctgcagacagtcaggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattcttctgctgaatatatgtggtccattcccatctggtgccctgcagacagtcaggg 453

                                                                       
Query: 65  cttcctccattcttctgtgatgctgtggccttgctttgcagctgtgttccttcctgggct 124
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 452 cttcctccattcttctgtgatgctgcagccttgctttgcagctgtgttccttcctgggct 393

                                                                       
Query: 125 ctgggctcaggcccctccccatcctgagacgtctctgtctcccctcaccgtcaggccata 184
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 392 ctgggctcaggcccctccccatcctgagaagtctctgtctcccctcactgtcaggccata 333

                                                                       
Query: 185 ccttcctcccactgaagactccattctcaggggcactctgtagattgttcagatgtgtgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccttcctcccactgaagactccattctcaggggcactctgtagattgttcagatgtgtgg 273

                                                                       
Query: 245 gtcaaatgcctgtgctcttgcctagtactggtagcccttggtgacttcccaggtggcttc 304
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 272 gtcaaatgcctgtgctcttgcctagtactggtagcccttggtgacctcccaggtggcttc 213

                   
Query: 305 agcagttc 312
           ||||||||
Sbjct: 212 agcagttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)