BAC Information

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BAC

Clone NameMSMg01-165O16
Chromosome15 (Build37)
Map Location 59,476,719 - 59,477,233
singlet/doubletsinglet
Overlap genenone
Upstream geneEG631797, Tmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1, LOC100040330, EG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2
Downstream geneTrib1, LOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266, LOC623048, LOC211832, LOC623094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165O16.T7 (MSMg01no165_o16.b1)MSMg01-165O16.TJ (MSMg01no165_o16.g1)
ACCAG363909AG363910
length7491,238
length of high quality
(start - end)		689 (36 - 724)44 (140 - 183)
definitionCHROMAT_FILE: MSMg01no165_o16.b1 PHD_FILE: MSMg01no165_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:16 2005CHROMAT_FILE: MSMg01no165_o16.g1 PHD_FILE: MSMg01no165_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCGTTT
CCTCGTCTAGCTCCTTCCCCAACAACACGCCCACCCACACCCCTCACGCC
CCACCCCCAACTCAGTGCAAGACTGGATTCCTGCAGAGAGCTTCTGAACC
ATGAAACCATCCTTTCAGCCACTAGCAAATACCTACTGTGTGTCAGGGTA
CCTACTAAGTGCTGTGGACAAAGTAAAGGTGCCCCCCTCAGTTCCTTTTT
GGCACAACACTAGAGGAACCCGTGAACCGTGAACCTGAGGGCATCAGGCT
CTGGCCTAACACTGAAGGACTCACGGAGGAAATCCACATCCTGTATCCGT
TCAGGTCTCACTTCCCTTTCAAGACTCATCTTTTTCATCTCCTGGTCTCT
GTCCTACTCATGCCAGTTCCTGGCAGGGCCCCAAACACACCTGCCAATTC
ACACCTCTGCACAGTTGCCCAAAATATTCCCTCCCACTAGAATCTTTCTT
CTTCCTCTGCCAAGCTAATGAGCTCTTACTCATCCTGCAGAACACCTTCT
GTGTTTTCCCAGCACCTGCAGTCAGGTGTAAATTGCATCCAGCTGCAAGG
ACGTCCCATCTCCTGGCACTCTTTCCACTGGACTGCATTTCCAGGATAGA
AGGGTCTGACCATACTCACTCTAGCCCCAAGCTCAGGGTCAATCACAAAA
GAGGGGTTCAGCAAGTCCCTGTGGGATGAGGGTCACCCACAGGGACTGC

NNNGGTGTNNNNNNNAAAGATGCCAGCTGCGGGCCCCGGNCGCCCACXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAATAAGGGGGGATGGGG
AAAGAAATAAAAAGCCATAGAAAGGACCTGACCGCGCCCAGGTATGGAGA
AAGAGAAAGTTTATTGTAGATATGAGAAAGAACCATAGCCGAGACAGACA
CATCTGGGAGAATCCAGAGTGCTCATGATCCTGAGCCCTGTAGAGAGATG
GGGAGGGGAAGGGAGAGAGGGGAGCACCTGGAGGTCACAGGTAACCACGC
GCACGGAACTAAAATGTCTAGATTATATAGCCAAGAGCCTGGGGGTGGGG
GAGCCCCCCCCCTGCGCTGGAGAGTTGAGGGTGCCCCATGCCCCCCCTTC
TTCGCACCGGGTAACGCCCCCACCCTGCGGGGGGGGCCCCCACCCCCCCT
TTTTTTTTCCCCCGCCCCACAAGNCCCCCCCCCCCCCCCGACACACGCTG
CACTCTTCACTCGTTCCCCCACCACCCCCCCCCCCGCCCCGCCCTCCCCC
CCCCCTCCCCCCCCCCCCCGCCCCCCCCCCCTCGCCACCCCCCCCCCCGC
CCCCCCCCCCCCCCCACCCGCCCCCCCCCCCCCCCCCCCCCCCTCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCC
CCCCCCCCCCGCCCCCCCCGCTCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCTCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CTCTCCCCCCCCTCCCCCCCCCCCCCCCCCCCCTCCCCCCCCTCCCCCCC
CCCCCCCCCCCCCCCCCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCC
CCCTCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCTCCCCCCCCCCCCC
CCCCCCCTCCCCCNCCCTCCGCCCCCTCCCCCCCCCCCCCGTCCCCCTCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCTCCTCCTCCCCCCCCTCCTCCCC
CCCCCCCCCCCCCCCCCCCCTCCCTCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCACCCCCCCCCTCCCCTCCCCCCCCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_o16.b1 MSMg01no165_o16.b1 CHROMAT_FILE:
MSMg01no165_o16.b1 PHD_FILE: MSMg01no165_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:16 2005
         (689 letters)



>mm_chr15_59476719_59477807
          Length = 1089

 Score =  973 bits (503), Expect = 0.0
 Identities = 512/515 (99%)
 Strand = Plus / Minus

                                                                       
Query: 11  cgtttcctcgtctagctccttccccaacaacacgcccacccacacccctcacgccccacc 70
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 515 cgtttcctcgtctagctccttccccaacaacacgcccacccacgcccctcacgccccacc 456

                                                                       
Query: 71  cccaactcagtgcaagactggattcctgcagagagcttctgaaccatgaaaccatccttt 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cccaactcagtgcaagactggattcctgcagagagcttctgaaccatgaaaccatccttt 396

                                                                       
Query: 131 cagccactagcaaatacctactgtgtgtcagggtacctactaagtgctgtggacaaagta 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 395 cagccactagcaaatacctactgtgtgtcagggtacctactaagtgctgtggataaagta 336

                                                                       
Query: 191 aaggtgcccccctcagttcctttttggcacaacactagaggaacccgtgaaccgtgaacc 250
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 335 aaggtgcccccctcagttcctttttggcacaacactagaggaacccttgaaccgtgaacc 276

                                                                       
Query: 251 tgagggcatcaggctctggcctaacactgaaggactcacggaggaaatccacatcctgta 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgagggcatcaggctctggcctaacactgaaggactcacggaggaaatccacatcctgta 216

                                                                       
Query: 311 tccgttcaggtctcacttccctttcaagactcatctttttcatctcctggtctctgtcct 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tccgttcaggtctcacttccctttcaagactcatctttttcatctcctggtctctgtcct 156

                                                                       
Query: 371 actcatgccagttcctggcagggccccaaacacacctgccaattcacacctctgcacagt 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 actcatgccagttcctggcagggccccaaacacacctgccaattcacacctctgcacagt 96

                                                                       
Query: 431 tgcccaaaatattccctcccactagaatctttcttcttcctctgccaagctaatgagctc 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  tgcccaaaatattccctcccactagaatctttcttcttcctctgccaagctaatgagctc 36

                                              
Query: 491 ttactcatcctgcagaacaccttctgtgttttccc 525
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  ttactcatcctgcagaacaccttctgtgttttccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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