BAC Information

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BAC

Clone NameMSMg01-166C18
Chromosome15 (Build37)
Map Location 86,773,414 - 86,774,018
singlet/doubletsinglet
Overlap geneLOC100042309
Upstream geneCelsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
Downstream geneAW049604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166C18.T7 (MSMg01no166_c18.b1)MSMg01-166C18.TJ (MSMg01no166_c18.g1)
ACCAG364081AG364082
length756744
length of high quality
(start - end)
313 (43 - 355)607 (77 - 683)
definitionCHROMAT_FILE: MSMg01no166_c18.b1 PHD_FILE: MSMg01no166_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:35 2005CHROMAT_FILE: MSMg01no166_c18.g1 PHD_FILE: MSMg01no166_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCAGCCATAAGCTGGAAAGACGGCACAGTGCTTAACACCACTGACTG
CCCTCACAGACTAGAATTTGATTCCCAGCACCCACATCAAGTGGCTCAGA
ACTGCCTGTTACTCTAGGGCATCCAATGCTCTCCTCTGGTCTCTAAAGGC
ATCTGTACTCAGTTGTACTTACACACACACACACAGACACACACACACAC
ACACAAATCACATCAAAGGAACATAAGAGTGTAACTTTAACTTTTTCAAA
TCTTAATTTTAATGATGGTTCTTCAATGCTTTAACCTCCCTTGTAGCCCA
CCACCCAGTTTTATTGTACCCCCACACAAAGGATACAAGGGATGTGGACT
TGTTTAGAAAGCCCCCTTTTTTTTTAAGAAAAACTCTCATCTGTGTTGTA
TGGAAATCAGCAGTTCAGTTCACAGATCAGCAGTGGCAGCTCCATTCGCT
CACAAACACTTCATGGATACAGCAGCAGTCCAGTTCAGTAGAGTCCCTCA
GTCCCTCAGCAACAGCAGTGACATGACCTAGAAGAGGCAGCCAAGCTTCA
GCCAGGGCTCAAGTCAGCAGGAGGAACCATCAGGAATACCAGGAGAAGTT
CTCAGCTCTGCCTCTCTCAAGGAAGTGAAGATCATTAAAGACTGGACACC
CACAAACATTACTCGGCCTGCTGTACCATCAAGCTAAGATTCTTGGAGTC
CAAATC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAATGGTCTCGTAACTATCTTA
CAAATGGCTTGACAACCTTGCCTCCCTCCTCCACCCCAAGTACCACACCA
TCAAGGAACTGGGAAGAGAGGGGTTGAGGGTGGTTTCTCCAGACCATCAA
CGAGCAAGCATTCCTCCCAACACTGAGGTGCACTGAACACTTGGTAAGAC
AGGAACGATCGTGACAGTGACATTGGACAAGAGCAGTAAAAATAATGCAG
CACACTAATGTATTCGGCGAGAGTGTGACACTAGACACAGCTCCCCCACC
CCCAAATTAAATGCAGTCATATGTAAGAATGCCTCTGCACAGGCCCGACA
GACAGAGCTGGCTTTAGTTTTTGGAATGCAAAGATTTTTTTTTTACTTTG
GGTGAGGGGTGCTGTTTAGAAATAAAAGGAGAGAAAAAAAAGCCCTCAGG
ATTCACAGTGCTAAAACCTATAATAAAAGTTAAGTCCCTAGTTTTTAAAT
AAACAACCAGCCAGCCAGCCAGATGTATAACACCAGCCATACGGCAGGAG
TAGAGAGAATATTCCAACACTCCAAGAATGACTCCAAAAATGTTTCCTTT
GCTTTTTATGTGTGTGTGTGTGTGTGTGTGTGNGTGTGTGTGTGTGTGTG
TGTGTTGTATTCTTTTTCTTTAATAAGTCCATCTTTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_c18.g1 MSMg01no166_c18.g1 CHROMAT_FILE:
MSMg01no166_c18.g1 PHD_FILE: MSMg01no166_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:35 2005
         (607 letters)



>mm_chr15_86773214_86774219
          Length = 1006

 Score = 1067 bits (552), Expect = 0.0
 Identities = 593/608 (97%), Gaps = 5/608 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaatggtctcgtaactatcttacaaatggcttgacaaccttgcctccctcctccaccc 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 cagaatggtctcataactatcttacaaatggcttgacaaccttgcctccctcctctaccc 260

                                                                       
Query: 61  caagtaccacaccatcaaggaactgggaagagaggggttgagggtggtttctccagacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagtaccacaccatcaaggaactgggaagagaggggttgagggtggtttctccagacca 320

                                                                       
Query: 121 tcaacgagcaagcattcctcccaacactgaggtgcactgaacacttggtaagacaggaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaacgagcaagcattcctcccaacactgaggtgcactgaacacttggtaagacaggaac 380

                                                                       
Query: 181 gatcgtgacagtgacattggacaagagcagtaaaaataatgcagcacactaatgtattcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcgtgacagtgacattggacaagagcagtaaaaataatgcagcacactaatgtattcg 440

                                                                       
Query: 241 gcgagagtgtgacactagacacagctcccccacccccaaattaaatgcagtcatatgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcgagagtgtgacactagacacagctcccccacccccaaattaaatgcagtcatatgtaa 500

                                                                       
Query: 301 gaatgcctctgcacaggcccgacagacagagct-ggctttagtttttggaatgcaaagat 359
           |||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 501 gaatgcctctgcacagacccgacagacagagccaggctttagtttttggaatgcaaagat 560

                                                                       
Query: 360 tttttttttactttgggtgaggggtgctgtttagaaataaaaggagagaaaaaaaa-gcc 418
           ||||||   |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 tttttt---actttgggggaggggtgctgtttagaaataaaaggagagaaaaaaaaagcc 617

                                                                       
Query: 419 ctcaggattcacagtgctaaaacctataataaaagttaagtccctagtttttaaataaac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctcaggattcacagtgctaaaacctataataaaagttaagtccctagtttttaaataaac 677

                                                                       
Query: 479 aaccagccagccagccagatgtataacaccagccatacggcaggagtagagagaatattc 538
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 678 aaccagccagccagccagatgtataacaccagccatactgcaggagtagagagaaaattc 737

                                                                       
Query: 539 caacactccaagaatgactccaaaaatgtttcctttgctttttatgtgtgtgtgtgtgtg 598
           ||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 738 caagactccaagaatgactccaaaaatgtttcctttgctttgtgtgtgtgtgtgtgtgtg 797

                   
Query: 599 tgtgtgtg 606
           ||||||||
Sbjct: 798 tgtgtgtg 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space:   594612
Effective search space used:   594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)