BAC Information

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BAC

Clone NameMSMg01-166M08
Chromosome15 (Build37)
Map Location 47,710,716 - 47,711,021
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166M08.T7 (MSMg01no166_m08.b1)MSMg01-166M08.TJ (MSMg01no166_m08.g1)
ACCAG364491AG364492
length751726
length of high quality
(start - end)
316 (47 - 362)186 (78 - 263)
definitionCHROMAT_FILE: MSMg01no166_m08.b1 PHD_FILE: MSMg01no166_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:22 2005CHROMAT_FILE: MSMg01no166_m08.g1 PHD_FILE: MSMg01no166_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCGATATATATCCAAGTACATTTTACATTGATCTATGCAGAAT
CCTAACTTGGCAGCCATTTTAAGCACTAACTGTATTACTCATGAAGAGAA
ACATTTCTCTGTCATCTTATTTATACTTTTAAAACCTTAGTAACTAAAAG
GAAAAAGGCAAAAATAAAATAGACCCAAATGATATGAGAAATGAAAAATA
AACAAAGCCACAACATGATAATTATTTGAATGATTGTTTTCATAGAATTG
GACACCCTATTTCAGTGAGGCCACAGTGTAGGTATAGCCATGACTGCTCT
TTTCTTTGGTTGTTGGAGACCCCCCCCCAAGTTCTAATACTTACAGAAAA
AGTACTTTTATCTACCAAAACAACTCTCTAGTCCCTACTCTGTTTTCCTT
TTCTTTTAATGAATAATAAAATATGTAATAAAATGCATAAAATATACTAT
GTATTTTATTATTCACTGTATATTAATCATTGTAATAATAGAATATATAA
TAAATGTCTATTTAATAAATTAATATTATATTGCTATTATGTGTAAAATA
TAATATTACTATTATAATATAACACTATTCTGCTAGTTATTTAAAAATAT
GCCAGATTTAATTTAACAACCAATAATCTTTTTGCTACCATCCACTCCAG
TAATGACCCGGGGTAAATAGACTAAACCCCCTGTTGGCTTCTCTGAGCAC
A
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGCCCCTAGTTGGTAGAACTG
TTTAGGAGGGTGTAGAGGGTGTGGCTTTGTTGTATGGGGTATACATTTGA
GGTTTCAAAAGCCCTAAGAATTCCAGTGCCTCTTCCTTTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTCTACCTGTGTTGGTGAATTGAGTTG
GGAGGGGGAGTCTGAGATGTGCTCTCAAAAACATAGACTAGTGCCCTGCT
TCTTGTAAGGATAGACATGGACTCTCACTAACCCTCTAAAATTATAAGAA
GCGAATAAACTATTTACCCCAAATAAGCTCTCTTGATCATGATATTGATA
CATATATATATAGAACTAAATATATATGTGTAGATAAGCCCTACTTCATC
GTCTATTGTTATTCGTCCCCTGTTAAATGGTATTGTGTCTGAGTGCTATC
TGCGCTTCCGTGCGCTACAGTTTGGAGCCATCTGGAGATACGGACATAGT
TACCTATCACATAATTATAGAGTTTAGAGAAGGCATATTATATTACAGAT
TGAGGAGGGAGAATAAATACCACAGAGCTATTGAGGATCTTAGTGGGTAG
AGCTCCACCCGAAAGTGATCTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_m08.b1 MSMg01no166_m08.b1 CHROMAT_FILE:
MSMg01no166_m08.b1 PHD_FILE: MSMg01no166_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:22 2005
         (316 letters)



>mm_chr15_47710509_47711224
          Length = 716

 Score =  545 bits (282), Expect = e-159
 Identities = 300/306 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcaccgatatatatccaagtacattttacattgatctatgcagaatcctaacttggcag 67
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 208 ttcaccgatatatatgcaagtacattttacattgatctatgcagaatcccaacttggaag 267

                                                                       
Query: 68  ccattttaagcactaactgtattactcatgaagagaaacatttctctgtcatcttattta 127
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctattttaagcactaactgtattactcatgaagagaaacatttctctgtcatcttattta 327

                                                                       
Query: 128 tacttttaaaaccttagtaactaaaaggaaaaaggcaaaaataaaatagacccaaatgat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tacttttaaaaccttagtaactaaaaggaaaaaggcaaaaataaaatagacccaaatgat 387

                                                                       
Query: 188 atgagaaatgaaaaataaacaaagccacaacatgataattatttgaatgattgttttcat 247
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 388 atgagaaatgaaaaataaacaaacccacaacatgataattatttgaatgattgttttcat 447

                                                                       
Query: 248 agaattggacaccctatttcagtgaggccacagtgtaggtatagccatgactgctctttt 307
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 448 agaattggacaccctatttcagtgaggccacagtgtaggtatagccatgactgccctttt 507

                 
Query: 308 ctttgg 313
           ||||||
Sbjct: 508 ctttgg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)