BAC Information

Click to search

BAC

Clone NameMSMg01-167E07
Chromosome15 (Build37)
Map Location 44,393,605 - 44,393,841
singlet/doubletsinglet
Overlap genePkhd1l1
Upstream geneLOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2
Downstream geneEbag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167E07.T7 (MSMg01no167_e07.b1)MSMg01-167E07.TJ (MSMg01no167_e07.g1)
ACCAG364813AG364814
length730666
length of high quality
(start - end)
686 (45 - 730)239 (317 - 555)
definitionCHROMAT_FILE: MSMg01no167_e07.b1 PHD_FILE: MSMg01no167_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:59 2005CHROMAT_FILE: MSMg01no167_e07.g1 PHD_FILE: MSMg01no167_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAAATTTGCCATTGTTTATATATATACAACTCATAAGAAGAAAAT
GTTCTTTTAACTGCCAGGCATAGTGGCGCACACCTTTAATCCCAGCACTC
GGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
AAGTGAGTTCCAGGACAGCCAGGACTATACAGAGAAACTCTGTCTAGAAA
AACCAAAAAAAAAAAAAAAAAAAAAAGTTCTTTTAAGAAGACTGTCTTTG
GACATTTAAGAATTTGTTCTAGATTGCTTGGACAAGACCTCTTAAGGCAA
TGCCACGCTAGATTTATATCTCAGGCAGATTACAGGCCTAACACAAGAAT
AATTAGGCATATAATCTCATTCTTTACATCATCAAAATAGTAATGGCTTA
AGATAACATTTTGGTATTTTTAGAGAATGTGCATGTCAAATTATGAAGAA
TTGTTCTCAGTTTCTGCCTGTTCCACATAATGATGTTAATTCTTGAGGAC
TTATACTTAATCAATTATTGCAAATGGATACTTATTTCTGATTAAAAATA
AATAAATAAATAAATATGCACATGTGACTATTGATACCTTTTCAGGCTTT
CTAGTTACAACTGCTCTACAAGAGAAACAACTAAGAGTGCAATTAGTCAT
TGCCTATGTTAAATTTTTTTATACTTGGNG
GATTACCCGAATACGTCTCTCCTTCAGGAGNGGTTGGTGAGCTGGACCTG
CATGGACTTCCACCTTCAGTTTATAAAACTAAACTGTTAGAAACTGCGGA
AGCAGGCTCCAAAATCTTATCTCTAGTGGATGCTGTGGATTGGCAGGTAG
AAAACAAAAAATAGATGAATATACCATGAGTTTACTTGAAACAGTTTCTT
CCCTGTTTTCTGTTTACTTCCTATAATTAACAGTATTTAAAAATGTATAT
CTTATAGTTCTCAATTCAATTGATGACCTGATAACAATTAGNTAAAAATT
GTGATGTTCCCCCCCCTTCAAACTATATAAAGACCATTATGGGTACCTTA
GAAATAAAAGAAAAGATATGAAAATTGTGGGTTCTACGTATTTATAAATT
GTAAAGAGTAGAATTATGTTAAGTATATTTTACTTTTCTCTTGGTTACCT
CATCACTTGTTATCTTTGATGTTAAATGTTTAACACTTAGGGAAAAAACA
CAATGACATTAAGTAATACCTATGCTAAATGAGAGAACTTCATAATTTTG
ATTGTTCTTTTAGATTTTGCTGATTGGACTGCGAAGTGGCCACTGTTTTT
TTTTTTTTTTTTCCACACCACCACCTTCCACCCGCCCATCCCCCCCCTCC
AACCCTACAACATCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_e07.g1 MSMg01no167_e07.g1 CHROMAT_FILE:
MSMg01no167_e07.g1 PHD_FILE: MSMg01no167_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:59 2005
         (239 letters)



>mm_chr15_44393405_44394043
          Length = 639

 Score =  443 bits (229), Expect = e-129
 Identities = 235/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaaactatataaagaccattatgggtaccttagaaataaaagaaaagatatgaaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaaactatataaagaccattatgggtaccttagaaataaaagaaaagatatgaaaatt 260

                                                                       
Query: 61  gtgggttctacgtatttataaattgtaaagagtagaattatgttaagtatattttacttt 120
           ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgagttctatgtatttataaattgtaaagagtagaattatgttaagtatattttacttt 320

                                                                       
Query: 121 tctcttggttacctcatcacttgttatctttgatgttaaatgtttaacacttagggaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcttggttacctcatcacttgttatctttgatgttaaatgtttaacacttagggaaaa 380

                                                                    
Query: 181 aacacaatgacattaagtaatacctatgctaaatgagagaacttcataattttgatt 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacacaatgacattaagtaatacctatgctaaatgagagaacttcataattttgatt 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)