BAC Information

Click to search

BAC

Clone NameMSMg01-167P03
Chromosome15 (Build37)
Map Location 67,061,649 - 67,062,011
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnq3, Lrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
Downstream geneZfat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167P03.T7 (MSMg01no167_p03.b1)MSMg01-167P03.TJ (MSMg01no167_p03.g1)
ACCAG365277AG365278
length783746
length of high quality
(start - end)
366 (45 - 410)566 (77 - 642)
definitionCHROMAT_FILE: MSMg01no167_p03.b1 PHD_FILE: MSMg01no167_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:50 2005CHROMAT_FILE: MSMg01no167_p03.g1 PHD_FILE: MSMg01no167_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTCTCACCATTGCTTACAAGTCACAGGAGCACAGCAGAAGATG
GCAGTGCTCAGGATTTGGATTAAGTCTTGGGGACTGGCTGGGTAGCTGAG
ATTTTGGTCCTGAAGGAACATGCACAGTGAAGAGCATGGGTTCTTGACCT
TGGTACTACTGCCATTTTGGGTCAGATCTTTCTTTGTTGGAGGATAGGGG
CTGTTTGGGTGCATAGCAGCATGCTCAGCTGCGCCCTTGCTCCTTACATA
TAACCACAAGCATCTTCCGGATATGTCATTGCCTCAGGTCTGCGCTGGGG
TCAACCAACTGTGGACTAATACCTTGAGAAGCAGATATGTTTGATGGATC
ATAATCTGAGTAGTGGTTTCAGTCTCACAGCATCTGTATGCGTATAGTGT
GGATGAATAGGTCCCCCCCGCTCACGGTGGGTGTTTTATATACTAAAAGT
AGGACCTGATCCAACTCCTGGTTTCCCATCTACACGTTTCCTTCTAGAAT
CCATGATCATCTGTTTTATCTCATCACTCCTAGCCCCGAATTTTAACCTT
CTTAACTTCTTTTGTGCCGCCCCTGCCTCTTCTTGGCCTCCCCCAGGTGT
TTCTTCTTTTCTTCTTCCCCTCCGTCATACTCTTTCTCTTTTCCCCTCTA
TTCTCCACCCGTCTATCCCCCCATATTTGGTTTCCTCCTCCCGCCTACTT
TCTCTCCTCTCCTTTGTTTTTCCCACTCCCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAACAACAACAACAGAAAACCC
TTACAAACATGCTCCATGAAAGAAACAAACACACAAAAGATTGTATTGTT
CACACAAAATGTTGGGGAAACAGGGAGATGAGAAGCAGATTGGGGAAACA
GGGAGATGAGAAGCATATTAAAGGACTTTAAGTGGATGTAGGAATGTGGA
AAGGCTACTAACTGGACACAGAGTTTCATTATGAGATGACAGGAATGTTC
TCAAATTAGATTCTGGAGATGGTCATAACTCCATAAACATACTAAGAGAC
ATTAAACTGTATACTTAAATTGGATGAATTGTATAGTATATGAACAGTGC
TTCAATAATATTTTAATACAATATTTTTATTTCCCCCTTGATAGTTTCAT
GCATGGATACAGTGTAGTTTGATCAAATGCATCCTCAACACTTCCTTCCA
ACTCTTCCTCCATTCCTCCTGTCATTGTTCCCTCCCCACTTTACATCCTG
TTGCCTGTTTTACAATCCACTAAGTCCAATCCACTAGACCATATGTAATC
TACCGATGGCCTCACCTCTGAGGAAAGCTGACTTGCTTTACTTCAGCACG
TATTAACTATAGTTTCTCAGCTAAGGCGCGATGCCTCACAAATCTCTCTT
ATTTATGCTAGCATGCAACGCGCCTTGTTCCTGCACAGGTTTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_p03.b1 MSMg01no167_p03.b1 CHROMAT_FILE:
MSMg01no167_p03.b1 PHD_FILE: MSMg01no167_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:50 2005
         (366 letters)



>mm_chr15_67061446_67062211
          Length = 766

 Score =  663 bits (343), Expect = 0.0
 Identities = 358/363 (98%), Gaps = 1/363 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctctcac-cattgcttacaagtcacaggagcacagcagaagatggcagtgc 63
           |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 204 gaattctttctctcacacattgcttacaagccacaggagcacagcagaagatggcagtgc 263

                                                                       
Query: 64  tcaggatttggattaagtcttggggactggctgggtagctgagattttggtcctgaagga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaggatttggattaagtcttggggactggctgggtagctgagattttggtcctgaagga 323

                                                                       
Query: 124 acatgcacagtgaagagcatgggttcttgaccttggtactactgccattttgggtcagat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acatgcacagtgaagagcatgggttcttgaccttggtactactgccattttgggtcagat 383

                                                                       
Query: 184 ctttctttgttggaggataggggctgtttgggtgcatagcagcatgctcagctgcgccct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttctttgttggaggataggggctgtttgggtgcatagcagcatgctcagctgcgccct 443

                                                                       
Query: 244 tgctccttacatataaccacaagcatcttccggatatgtcattgcctcaggtctgcgctg 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 tgctccttacatataaccacaagcatcttccggaaatgtcattgcctcaggtctgcgctg 503

                                                                       
Query: 304 gggtcaaccaactgtggactaataccttgagaagcagatatgtttgatggatcataatct 363
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 504 gggtcaaccaactgtggactaaaaccttgagaagcagatatgtttgatggaccataatct 563

              
Query: 364 gag 366
           |||
Sbjct: 564 gag 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)