BAC Information

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BAC

Clone NameMSMg01-168G07
Chromosome15 (Build37)
Map Location 50,421,360 - 50,421,747
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039539, LOC665160
Downstream geneTrps1, LOC100039644, LOC100039662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168G07.T7 (MSMg01no168_g07.b1)MSMg01-168G07.TJ (MSMg01no168_g07.g1)
ACCAG365592AG365593
length1,0101,172
length of high quality
(start - end)
427 (25 - 451)340 (103 - 442)
definitionCHROMAT_FILE: MSMg01no168_g07.b1 PHD_FILE: MSMg01no168_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:35 2005CHROMAT_FILE: MSMg01no168_g07.g1 PHD_FILE: MSMg01no168_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGCATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTT
TGTTTAGCTCTGTACCCCCTTTTTAATAGGGTTATTTGCCTTTTCTGGAG
TCCAACTTCTTGAGTTCTTTATATATATTGAATATTAGTCCCCTATCAGA
TTTAGGATTGGTAAAAACCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCT
CTTTTTGTTTGTTTGTCTTTTCGAGACAAGGTTTCTCTGTGTAGCCCTGG
TATCCTGGAACTCACTCTGTAGACCAGGCTGACCTTGAACTCAGAAATCC
ACCTGCCTCTGCTTCACAAGTGCTGGGATTAAAGGCATGTGCCACCATGC
CCGGCTAGGCCTTTTGGTTTTATTGACTGTGTTTTTTGCCTTTTTTTAGC
TTTGCAATTTTATGAGGTCCCATTTTTCGATGCTTGATCTTTTTTTTTTT
TCCCCCCCCCCCCAGATGGAATGAAGGATAAAAAAAAGAGGTGGTCGTTN
GGGGATNTATCCCATAAACAACTACCAAACCCAGACACTATTGCATATGC
CAGCAAGATTTTGCTGACAGGACCCTGATATAGCTAGCTCTCTCTTGTGA
GGATGTGCCAGTGGCTGGCAAATACAGAAGTAGATGCTCACAGTCATCTA
TTAGATGGAACACAGGGCCCTCAATGAAGGAGCTAGAGAAAGTACCCAAG
GAGCTAAATGGGCCTGCAATCCTATAGGAGGAACAACAATATGAACTAAC
CAGTACCACCAGAGCTTTTGTCTCTAGTTGAATATGCAGCAGAGTTTGAC
CTAGTTAGCCTTCATTTGGAGGAGAGGCCCTTGGTCCTGTGAAAATTATA
GGTCAGGGGAATGCCAGGGCCTAGAAATGGTACTTTATGTTTTGTTAATT
TTTCTGTATATTTTTCATTTTTTCTTATCTTCTTTCTCTTCACTTTTTTT
TTTATTCTCTTTTTCCTATTTTCTTATTTTTTCTATGTTATTCTTCATTT
CTTCTATCTT
NAAAAAGAGGATAGACTGGGGCGCCGGTXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTAAATACTCTTTGGTCCCGCTATATAGT
CAGTGAAATACATATAATATTACTGTTCAAGCCAACAGATAAAAATGATT
CAATTATATATATATATATATATATAGTAGATCTACTTAAACAATAATTC
CTTGCAATATAGGCAAGGACTAAATAATAGTTACATGAGAATTTACTTAT
AAGTTTGTAAGCTTATAGTCTTCATAGTACCTATGGCATCTTAAAAATAG
TAAATTATCAAGTGTATTTATAATGCTACTCCTAGGCAATTTGTCCCAAA
TTCCTGAAGAAACACTAGACTTATCTTTTTGAGATTTTCTAATTTTTTTA
TGTTCTAAAGACAGTATCCCTCTTCTGACATATCCATTATTTGTTTTTTT
TTCCCCCCCCCCCCCCAAGTTGATATCTTGACATAAAGAAAGGGGCGGAT
GACCCGTCCAGCAGGTCCAGTTATCAAGGGGACCTTCTCCTAAGAACCAA
TTGGGGGGTAGAGAGAGACGAGGGCCTTGTGCAAATAACGACACGGAAAC
CGTTCTGGAATGCATCAAAGCCCCAAATATATTGAGAAAGGTCCAAGGCT
TAAATGCACAAGCAAAAGGGGAAGTACAGATACTTATCAGTGGGAGGGGT
AGGGCAATACAAGCAAAAGGATAAGTACTTATGTGAGGGTTGTCATATAT
AAATTCTTCTTTTGTTAGTCTACCCTGGCAAGCCTGAACTTGCCGGTATC
AGTCTGTGGTCAGGACATATAAGAAGACTTTAAGGCTGGTACATCCCATG
GCTCTTCTCAAAATCCACGATTCTTTGTCCCGCTTTTTACCCTCTTTTCT
TCTAAAGTTTAAAGCCCCAATTTTATACATTCTAATTTTGTTTTAATTTT
CCCCTATTGTCCTTCTTTATTTTACCTTGTGTTTATCTATGTTAATTTCT
CTTTTATATTGTTTGTATTTTAATTCTTTTTTTTTTATATTTTTTTTTCT
TATTTATTTCTTTTCTTTATTGTTTTAATTTTTCTTTTTCTTTTTTTATT
ATCTATCTTTTATTTATACGTCATATATTACTCTACTTCATCATCTTCTG
TTTTTCTCTACTCCTTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_g07.g1 MSMg01no168_g07.g1 CHROMAT_FILE:
MSMg01no168_g07.g1 PHD_FILE: MSMg01no168_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:35 2005
         (340 letters)



>mm_chr15_50421086_50421825
          Length = 740

 Score =  514 bits (266), Expect = e-150
 Identities = 334/388 (86%), Gaps = 48/388 (12%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgaaatacatataatattactgttcaagccaacagataaaaatgattcaat-------- 52
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 662 gtgaaatacatataatattactgttcaagccaacagataaaaatgattcaattatatcta 603

                                                                       
Query: 53  ----------------------------------------tatatatatatatatatata 72
                                                   ||||||||||||||||||||
Sbjct: 602 tatatctatatatatatacacatacatacatatatatatatatatatatatatatatata 543

                                                                       
Query: 73  tagtagatctacttaaacaataattccttgcaatataggcaaggactaaataatagttac 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tagtagatctacttaaacaataattccttgcaatataggcaaggactaaataatagttac 483

                                                                       
Query: 133 atgagaatttacttataagtttgtaagcttatagtcttcatagtacctatggcatcttaa 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 atgagaatttacttataagtttgtaagcttatagtcttcatagtacctatggcatcttaa 423

                                                                       
Query: 193 aaatagtaaattatcaagtgtatttataatgctactcctaggcaatttgtcccaaattcc 252
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaatagtaaattagcaagtgtatttataatgctactcctaggcaatttgtcccaaattcc 363

                                                                       
Query: 253 tgaagaaacactagacttatctttttgagattttctaatttttttatgttctaaagacag 312
           ||||||||||||||||||||||||||||||||||||||   |  ||||||||||||||||
Sbjct: 362 tgaagaaacactagacttatctttttgagattttctaaaactaatatgttctaaagacag 303

                                       
Query: 313 tatccctcttctgacatatccattattt 340
           ||||||||||||||||||||||||||||
Sbjct: 302 tatccctcttctgacatatccattattt 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)