BAC Information

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BAC

Clone NameMSMg01-169D04
Chromosome15 (Build37)
Map Location 8,404,202 - 8,404,510
singlet/doubletsinglet
Overlap genenone
Upstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437
Downstream geneLOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169D04.T7 (MSMg01no169_d04.b1)MSMg01-169D04.TJ (MSMg01no169_d04.g1)
ACCAG366141AG366142
length737735
length of high quality
(start - end)
318 (46 - 363)63 (78 - 140)
definitionCHROMAT_FILE: MSMg01no169_d04.b1 PHD_FILE: MSMg01no169_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:49 2005CHROMAT_FILE: MSMg01no169_d04.g1 PHD_FILE: MSMg01no169_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAATTGGTAAAGCCCCATGTTTAATTTGTATTTACATTAAATCT
AGCAGTAGCATTGCTGTAAGAACATCATAGTTACAAATGCTAGCTCTTTA
AGGGGTGCTCACTGGGCCAGACGTGGTGGCACATGCCTTTAATCCCAGCA
CTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGTCAGCCTGGTCT
ACAGAGTGAGTTCCAGGACAGTCAGAGCTACACAGAGAAACCCTGTCTCA
AAAAAAAAAAAAAAAATACACAATCCCCCCCCAAAAAAAGGGGTGCTCAC
TGAAAAACTTTGTTTGTTTCCCTATACAAAGACCCCATTATATTACTCCT
CAGTATGGAAAGAGTTAAGCATGAAAAAAACAAAAATAATTCTCTTTTTT
GAGGACTAGTGTCTTAATGAAAACATACTGCAAAAATATGTGGACTTGTA
GATCCCGACTAGGAAGATGCACGGTTTTGTGTGAATGAACAAGACTCGCT
GTGGAGGTGCACATCTGTAATCACAGTACTTGAAACATATAAATTTCAAG
GGCAGCCTGCTAACCGATAAAGACCCTGACTCCGATGACAACACCGCAGA
ATTATGTCTAATTCGATACTTCTAAGTCCTAGGCTTTGTCCCCCTTACTT
ACCCGGGTAACTTCCATGGTTTTTAGTGCTCCCCAAC
GCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCATGATGCTATCCCTGGA
GGCTTATGGCAAAGTTTAGGGACAAGATATGAAAAGCCACAGGGAGATAA
ACTGTCCACACTGATGCTGTTTAGGGTCACCCAAGGGGAATCTGAAATGA
TGCATGTCTGAAACAGGCCTGACAGGGGACATACCATCTACACTCCTGAC
TGGTTAATGCTTCAAATAGCCTTCCTGAAGTTAATATAAAGAATATTTTT
CTTTTTTAATACCAACATCCACACATGTTGATTATTTTAGAAATTCAGGT
AAGTCGGAATCTTGTTTTTTATTTTCTGCACCCGCCCACCCCCACGGTAA
AATAGAATATACATTCTTACAGTTTACTACATACAATAATACTTCCTGAA
GTTGTGGAAGAATTACAATATTTCTCTGTTCCCTTTCCTCCATCTAAGCC
ATCACACATACCCCTCCTCACTCTCCTTCAAATTCATGGACTCTTCTTTC
ACCAGGTGTTATTGCAAGCACAAATGGGTTATTGCAAGCACAAATGTTTA
TATACCTATACCTATACCTTATCCCTATATCTTCCCCTCTTGGGTGCACT
CTAACAAAACCACCCCAAGGAAGGATATATAAACCACCCTTTTAACTCCC
TCTTATTTACTATGTACCTCCCCCCCCATTATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_d04.b1 MSMg01no169_d04.b1 CHROMAT_FILE:
MSMg01no169_d04.b1 PHD_FILE: MSMg01no169_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:49 2005
         (318 letters)



>mm_chr15_8403999_8404716
          Length = 718

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%), Gaps = 2/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagaattggtaaagccccatgtttaatttgtatttacattaaatctagcagtag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagaattggtaaagccccatgtttaatttgtatttacattaaatctagcagtag 263

                                                                       
Query: 64  cattgctgtaagaacatcatagttacaaatgctagctctttaaggggtgctcactgggcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattgctgtaagaacatcatagttacaaatgctagctctttaaggggtgctcactgggcc 323

                                                                       
Query: 124 agacgtggtggcacatgcctttaatcccagcactcgggaggcagaggcaggcggatttct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agacgtggtggcacatgcctttaatcccagcactcgggaggcagaggcaggcggatttct 383

                                                                       
Query: 184 gagttcgaggtcagcctggtctacagagtgagttccaggacagtcagagctacacagaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagttcgaggtcagcctggtctacagagtgagttccaggacagtcagagctacacagaga 443

                                                                       
Query: 244 aaccctgtctcaaaaaaaaaaaaaaaaatacacaatccccccccaaaaaaaggggtgctc 303
           ||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||
Sbjct: 444 aaccctgtctcaaaaaaaaaaaaaaaaac-cacaa-ccccccccaaaaaaaggggtgctc 501

                      
Query: 304 actgaaaaact 314
           |||||||||||
Sbjct: 502 actgaaaaact 512



 Score =  112 bits (58), Expect = 2e-29
 Identities = 82/90 (91%)
 Strand = Plus / Plus

                                                                       
Query: 163 ggcagaggcaggcggatttctgagttcgaggtcagcctggtctacagagtgagttccagg 222
           ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 1   ggcagaggcagacggatttctgagtttgaggccagcctggtctacagagtgagttccagg 60

                                         
Query: 223 acagtcagagctacacagagaaaccctgtc 252
           |||| | | |||| ||||||||||| ||||
Sbjct: 61  acagcctgggctatacagagaaaccgtgtc 90


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)