BAC Information

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BAC

Clone NameMSMg01-170C16
Chromosome15 (Build37)
Map Location 96,609,139 - 96,609,450
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941
Downstream geneLOC546651, Slc38a4, Amigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r, Rapgef3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170C16.T7 (MSMg01no170_c16.b1)MSMg01-170C16.TJ (MSMg01no170_c16.g1)
ACCAG366821AG366822
length741760
length of high quality
(start - end)
319 (46 - 364)279 (76 - 354)
definitionCHROMAT_FILE: MSMg01no170_c16.b1 PHD_FILE: MSMg01no170_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:03 2005CHROMAT_FILE: MSMg01no170_c16.g1 PHD_FILE: MSMg01no170_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACGTATCATTTGTTAAACATGCTCTTACATTCTTCTCTGCCAAA
GGCTAATAGTTACAGATATAGCATTGAACAACACAGACACAGTCCTGTCT
CCACAGAAATGACTGCCAAAATAGATTTGGACAGGAACCCAGGGGCGCCA
AACGGGAGAGCAATAGAGAATCCGGCTGTGGCCAAAGCCGAGACTTCGGC
AAAAGGGGAGGCTCATCCTAGAAGCAAGAACCAGCGAGATACACAAGCTT
GAGTTCTGGGCATGCGCAGTTCGTACTGGAGTTCTGAAGCACCTGGGCCT
GCCTGCTCCTGTGTTTTCCTGAGCCCCGTGCGTGNTCATCATGCAGGGGC
AATCTAATGTATTCCTTGAATAGCATCAGTAGACATGAGCCATTGCGGTC
TTAAGCTTTCTATGCAGATCTGTGGGATTTTGTTTTGTTTTTCACTTAAT
TCTGTGCAGCGTGCGTATCTAGACAGCCAAGCCTAGCCTTAGCTCTCTGG
ACCTGACCTCCACGTCTTGTACCCCAGCATGCTGATAAGCACACTGTACC
CTACTTCCTGCTAGAAGCACCCCCTACTTTGATGTGGAGAGTCAGGGGAA
GTGTTTCAGTTCTCTTATTTACCACTCTTCGCACTGTTAACTCCCGCCAT
TTTTTTATATTGTTTTCTCCCCCTGGTTCTTGTTCCTCCCA
TGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTTACTAAGCGTTATGCTGCTGG
GTGGAGCTGGTGCACACTTTTGATCGCAGCACTTGGGAGGCAGAGGCAGA
CGGATCTCTGTGAGTTCGAGGCCAGCCTGGTCTACAGAGTAAGTTCCAGG
ACAGCCAAAGCTACACAGAGAAACCCTGTCACAAAAAAAAAAAAAAAAAA
CCAACCAACCAATCAACTAACCTACCAAATAAAATGAAAGATGTGGCTCT
TGAACTTAAATTAGTCCCTAAGTAATTGCTACTAAAAGGGAGTGGGGTGG
GGTCGTTTTTTTTTTTTCCCCCCCCCCCCCCCGGGGCTGTTTTTTTTAAT
GTATGTTGATTTTCCCCCCAAAAAAAAAAAACTCTTTTCCGCGGCCCTCC
CCCCCCCACTACTCCTCTTTCTTCCGCCCCTTGTTGCCCCCCCGTCCCCC
CCCCCCTGTCTTTTCTCTTCTTCCCCCCGCCCCTTCCCCCCCACACTTTC
CTCCCCCCGACCCCCCCCCCTTTCCGCCTTTTTTCGATTCCGTGCCCCCC
AGTTTCGCTCCCTTTGCCTCCTCCTCCTCCATACGATATTGTTGTCCTCT
ACCTGTACCGCCGCGCCCCTCTCCCCCCCCTTGTTTTCGAACGTCGCCGT
TGCCGCCTATCCACTCTGCTTCTCTCTTCGCCCACGGTTCTGCTCACCCC
CCTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_c16.b1 MSMg01no170_c16.b1 CHROMAT_FILE:
MSMg01no170_c16.b1 PHD_FILE: MSMg01no170_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:03 2005
         (319 letters)



>mm_chr15_96608827_96609545
          Length = 719

 Score =  580 bits (300), Expect = e-170
 Identities = 310/314 (98%), Gaps = 2/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacgtatcatttgttaaacatgctcttacattcttctctgccaaaggctaatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaattccacgtatcatttgttaaacatgctcttacattcttctctgccaaaggctaatag 565

                                                                       
Query: 65  ttacagatatagcattgaacaacacagacacagtcctgtctccacagaaatgactgccaa 124
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 564 ttacagatatagcattgaacaacacag--acagtcctgtctccacagaaatgactgccaa 507

                                                                       
Query: 125 aatagatttggacaggaacccaggggcgccaaacgggagagcaatagagaatccggctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aatagatttggacaggaacccaggggcgccaaacgggagagcaatagagaatccggctgt 447

                                                                       
Query: 185 ggccaaagccgagacttcggcaaaaggggaggctcatcctagaagcaagaaccagcgaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 446 ggccaaagccgagacttcggcaaaaggggaggctcatcctagaagcaagaaccagcgcga 387

                                                                       
Query: 245 tacacaagcttgagttctgggcatgcgcagttcgtactggagttctgaagcacctgggcc 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 386 tacacaagcttgagttctgggcatgcgcagttcgcactggagttctgaagcacctgggcc 327

                         
Query: 305 tgcctgctcctgtg 318
           ||||||||||||||
Sbjct: 326 tgcctgctcctgtg 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)