BAC Information

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BAC

Clone NameMSMg01-171A24
Chromosome15 (Build37)
Map Location 87,403,332 - 87,554,363
singlet/doubletdoublet
Overlap geneAW049604
Upstream geneLOC100042309
Downstream geneLOC100042329, LOC100042340, Zdhhc25, Brd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171A24.T7 (MSMg01no171_a24.b1)MSMg01-171A24.TJ (MSMg01no171_a24.g1)
ACCAG367426AG367427
length751708
length of high quality
(start - end)		319 (45 - 363)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no171_a24.b1 PHD_FILE: MSMg01no171_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:11 2005CHROMAT_FILE: MSMg01no171_a24.g1 PHD_FILE: MSMg01no171_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,403,332 - 87,403,646)(87,554,074 - 87,554,363)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCAAATTCTCAGGCCTCTGTGAGCAAGACACAGCTTACCCCAACC
TCCAAACAGACCCTCCACTGTGCCCCTGTAGTCACACCCCACTCCAGCCC
CTGGTAGCCACAACTTTGTATATACAGATACCATATCTCGGGACCCATTT
CTGGGTCTTGGATTCCTCTTCTGTTACTCTGCTCCTGACACATCTGAGGT
CTACCGGATGTAGCCTGAGCCAGGGCCTCTTCCGTTCTCAGGCTGGCGCA
GATTTTTATCTATTCCGCTATCAGAGGACATCTGTGCTGCTTCTGGTTTG
GGGTGATTATGATTTTTTCTGCCGCCCCCACCTGTGTATGTGTTTTTGTG
AGAATATAAGCTTCCATTTCTCCAGAAACAGAATATATATCTGTGAAATC
AGTAGCCCAGTGCAGAGTCACGAGGTGCTCTGTGGGTGGTGAGAACCAAC
CTCTAGCTGAAAATGTTTATATGTACCTGTGTGCAAATTGAGGAAGGTAT
CACTGTAATTCCCCCCCCGGCGGGAGAGGATGTTTTTTTTTTTTTATCAC
CACTTATTCCACCCATTTACCCGCCTCCCTTTGTTTTACCAACCGCTTTT
ATTTACTTTCCCTTTTTCCCATTTTTTTCTCTCCCCACCCTATTTCTACC
ATATTTATCCCACCTCTTTCTCCCCCCTTAACCCCCTCCTTTTTCTTATT
G

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGATGCAGACCTTTAGGCCAACCCCT
CCCCACTTCCAAGTTGTCAGTACCCTGTGGAGGCAGAGTCCCAAGAGAAA
TGAATACCGCCCACTGAACAGCTGCCTGCCTGTCCATCAGAAGAGAGCAG
GGCCCTCCATGCTCCGGGCCAGCCCTCCTGAAGCAGGGTTGCCATGGACA
GATGCTAGGCACAGCAGAAGATGCTGCCAGGACAGCTAATAAGCAGACCA
TCTGCATTTGTGTTCTTTCATGATATGACTGTTCTCCGCGCTCTTGACCT
CCAGATGCCCCATTGTTTTGCGCCGACGCCCCCCCCNNNNNNNNNNNNNN
NNNNNNNNNCNNNNNNNCCCCCCCACAAAAAAAAAAAAAAAGNCGGGGCG
GAGGGAGNCNACAACGGACGGNAACACACCCCCCGACACACCGAGCCACA
GAAGCACCAAAAAGACCAAAAGAAAACCAGCACACGCCACGCGCCCCCAA
CAGAGACNAAGACCCCCAGAACAACACCACACCCGCCACGGCAGCCGAGG
TCTATACCCCCCCCCCGCAACACCCACCCCCAAACCAACAACACCAGAAA
GGCACGACACACCAACCCCATTATTACGTCGTCCCTTTTTTTTTTTTTTT
TCCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_a24.b1 MSMg01no171_a24.b1 CHROMAT_FILE:
MSMg01no171_a24.b1 PHD_FILE: MSMg01no171_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:11 2005
         (319 letters)



>mm_chr15_87403129_87403847
          Length = 719

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccccaaattctcaggcctctgtgagcaagacacagcttaccccaacctccaaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccccaaattctcaggcctctgtgagcaagacacagcttaccccaacctccaaac 263

                                                                       
Query: 64  agaccctccactgtgcccctgtagtcacaccccactccagcccctggtagccacaacttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaccctccactgtgcccctgtagtcacaccccactccagcccctggtagccacaacttt 323

                                                                       
Query: 124 gtatatacagataccatatctcgggacccatttctgggtcttggattcctcttctgttac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtatatacagataccatatctcgggacccatttctgggtcttggattcctcttctgttac 383

                                                                       
Query: 184 tctgctcctgacacatctgaggtctaccggatgtagcctgagccagggcctcttccgttc 243
           |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 tctgctcccgacacatctgaggtctactggatgtagcctgagccagggcctcttccgttc 443

                                                                       
Query: 244 tcaggctggcgcagatttttatctattccgctatcagaggacatctgtgctgcttctggt 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 tcaggctggcgcagatttttatctattccgctatcagaggacatctgtgctgcttctgat 503

                          
Query: 304 ttggggtgattatga 318
           |||||||||||||||
Sbjct: 504 ttggggtgattatga 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no171_a24.g1 MSMg01no171_a24.g1 CHROMAT_FILE:
MSMg01no171_a24.g1 PHD_FILE: MSMg01no171_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:11 2005
         (290 letters)



>mm_chr15_87553874_87554563
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgatgcagacctttaggccaacccctccccacttccaagttgtcagtaccctgtggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 490 catgatgcagacctttaggccaacccctccccacttccaagttgtcagtaagctgtggag 431

                                                                       
Query: 61  gcagagtcccaagagaaatgaataccgcccactgaacagctgcctgcctgtccatcagaa 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gcagagtcccaagaggaatgaataccgcccactgaacagctgcctgcctgtccatcagaa 371

                                                                       
Query: 121 gagagcagggccctccatgctccgggccagccctcctgaagcagggttgccatggacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gagagcagggccctccatgctccgggccagccctcctgaagcagggttgccatggacaga 311

                                                                       
Query: 181 tgctaggcacagcagaagatgctgccaggacagctaataagcagaccatctgcatttgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgctaggcacagcagaagatgctgccaggacagctaataagcagaccatctgcatttgtg 251

                                                             
Query: 241 ttctttcatgatatgactgttctccgcgctcttgacctccagatgcccca 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttctttcatgatatgactgttctccgcgctcttgacctccagatgcccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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