BAC Information

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BAC

Clone NameMSMg01-172G22
Chromosome15 (Build37)
Map Location 35,652,755 - 35,809,293
singlet/doubletdoublet
Overlap geneVps13b
Upstream geneKcns2, Stk3, Osr2, EG666183
Downstream geneCox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172G22.T7 (MSMg01no172_g22.b1)MSMg01-172G22.TJ (MSMg01no172_g22.g1)
ACCAG368347AG368348
length743747
length of high quality
(start - end)
318 (36 - 353)290 (66 - 355)
definitionCHROMAT_FILE: MSMg01no172_g22.b1 PHD_FILE: MSMg01no172_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:54 2005CHROMAT_FILE: MSMg01no172_g22.g1 PHD_FILE: MSMg01no172_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,652,755 - 35,653,066)(35,809,004 - 35,809,293)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGTC
TTGACTTCCCTCCACTAGAAGCTGGAATAAGCTCTTTTCTCCCCAGGTTC
CTGTTGGTCATGGTTGTTTACTACAACAGAAAGGCAAACTTTGATGAAAG
AAAATTACATTATCAAAGATCTTACTTAACTTATGATTTGACATTTAATT
ATTTTATTCATTATTTAGTGATGCAAAAAATAATTCATGCCAAGGAACCT
AGTCATCTTAGATAATAGGATTCTAGAGTTCACCCTTATCACATTAAGTG
AAGTAAGTGACATGGTCCTTCACATACTCCTTGTTACAGCCTGGCTCTGG
GTATTCTAATCCCGAGAGCTAATCTCAGGTTATGGAGGTTTCACTCGGGT
GACATACCACCGTCATCATAAAAAAAACCTTCAGCTCGGAGACTAATAAT
CTATTGAACATTCATAGATTGTGCTGTTATATCTTAAAGCAATTCTATTA
AATGCATCACTGTAATATTCAAAATTGCTTACCTTCCTTTTTATGTAGTC
AAGTCCTCTTATTGGCTTACCTCTTCTTTCCCTTTCACTGTGCTTTCATC
TCATACTCAGACCATCTTAGGATACACCCTCATTCATGCATCTTGAACTT
CTGCCTCTTATTCTTCCCATGCATACGCTTGTTATATCTTAATAACGCAG
CCCTTTTTTTTGCCCGCTCGCCCTTCACCTCGGCGCTACATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAAAGACTTAAAAACTGAAAGGTTTCATCTCATTT
GACATCAGAAGAATATGCAACATTACGCCTATACAGGCTAACATTCCAAT
TCCATAAGGTAACTGCATCTGATTATTTCAAGAAATAGGAAAAATACAAT
TGAAAAAAGATGTTTATAAACTGGAACTTCTGAAATTGTTCTCCACTAGA
AAATAGTTTTTGAAGATTTTCTTATAAATTTATATTGCTTTTTGAAATGG
GTTAGCTTTATAAAGTCTCTGGTGGCAGACTATGCAGTCTTTCTGTGAAT
TTTTATTTTGNATTCCGAATCTTNNACCCATGACACTAATGATTCTATGG
TGTTATAATTAACAAGTGATATGAACAATTATACACATCTACGTACAGTT
ACAAGGCACCGGCAGGGTGGTGGATTAGTGTTTAATGCAGCTGCTATGCT
TGTCAGATCCCTTGTACACAATGCGAATGTAAGGAGTATGTGTCATCAGA
TGCAGTGTTGATTTAGCCAGGAGTACTGCTGACGAGGAAAAGCACATCTG
ATAAATGTTTAAGTATCAAAGAACATTCCATACCCTTTATGTATGCACCT
ACCAATGTCAGTTTTCCATACGGAATTCCTCCTGTTAAGATGTACGCGTA
CCCCCAGAATATAATCCAGCTATTGAACAGAACTCACTATCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_g22.b1 MSMg01no172_g22.b1 CHROMAT_FILE:
MSMg01no172_g22.b1 PHD_FILE: MSMg01no172_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:54 2005
         (318 letters)



>mm_chr15_35652551_35653268
          Length = 718

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgtcttgacttccctccactagaagctggaataagctcttttctccccaggtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtcttgacttccctccactagaagctggaataagctcttttctccccaggtt 264

                                                                       
Query: 65  cctgttggtcatggttgtttactacaacagaaaggcaaactttgatgaaagaaaattaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgttggtcatggttgtttactacaacagaaaggcaaactttgatgaaagaaaattaca 324

                                                                       
Query: 125 ttatcaaagatcttacttaacttatgatttgacatttaattattttattcattatttagt 184
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 325 ttatcaaagatcttacttaacatatgatgtgacatttaattattttattcattatttagt 384

                                                                       
Query: 185 gatgcaaaaaataattcatgccaaggaacctagtcatcttagataataggattctagagt 244
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 385 gatgcaaaaaataattcatgccaaggaacctagtcattttagacaataggattctagagt 444

                                                                       
Query: 245 tcacccttatcacattaagtgaagtaagtgacatggtccttcacatactccttgttacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcacccttatcacattaagtgaagtaagtgacatggtccttcacatactccttgttacag 504

                       
Query: 305 cctggctctggg 316
           ||||||||||||
Sbjct: 505 cctggctctggg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no172_g22.g1 MSMg01no172_g22.g1 CHROMAT_FILE:
MSMg01no172_g22.g1 PHD_FILE: MSMg01no172_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:54 2005
         (290 letters)



>mm_chr15_35808804_35809493
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagacttaaaaactgaaaggtttcatctcatttgacatcagaagaatatgcaacatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 caaagacttaaaaactgaaaggtttcatctcatttgacatcagaagaatatgcaacatta 431

                                                                       
Query: 61  cgcctatacaggctaacattccaattccataaggtaactgcatctgattatttcaagaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 430 cgcctatacaggctaacattccaattccataaggtaactgcatctgattacttcaagaaa 371

                                                                       
Query: 121 taggaaaaatacaattgaaaaaagatgtttataaactggaacttctgaaattgttctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 taggaaaaatacaattgaaaaaagatgtttataaactggaacttctgaaattgttctcca 311

                                                                       
Query: 181 ctagaaaatagtttttgaagattttcttataaatttatattgctttttgaaatgggttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctagaaaatagtttttgaagattttcttataaatttatattgctttttgaaatgggttag 251

                                                             
Query: 241 ctttataaagtctctggtggcagactatgcagtctttctgtgaattttta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctttataaagtctctggtggcagactatgcagtctttctgtgaattttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)